miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7669 5' -55.2 NC_001973.1 + 125628 0.67 0.907544
Target:  5'- aCCGgaGAuuUGGGCGGGCcGUUCGggUCg -3'
miRNA:   3'- cGGCaaCU--ACUCGCUCG-CGGGCuuGG- -5'
7669 5' -55.2 NC_001973.1 + 112803 0.67 0.903237
Target:  5'- cGCCGUUGcaaaacucggccgucGUGuGCGugaucaugacccgGGCGCCCGcGCa -3'
miRNA:   3'- -CGGCAAC---------------UACuCGC-------------UCGCGGGCuUGg -5'
7669 5' -55.2 NC_001973.1 + 145087 0.67 0.901356
Target:  5'- cGCCGgcGAgggucUGAGCuucaGAGUGgCCGAcGCCa -3'
miRNA:   3'- -CGGCaaCU-----ACUCG----CUCGCgGGCU-UGG- -5'
7669 5' -55.2 NC_001973.1 + 30393 0.67 0.901356
Target:  5'- gGCCGgcGcgGcGGCGgcggcggaGGCGCCgCGAACUg -3'
miRNA:   3'- -CGGCaaCuaC-UCGC--------UCGCGG-GCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 7831 0.67 0.901356
Target:  5'- uCUGUUGAgaacGGGCGGcgccGCGCCCGucgAGCUg -3'
miRNA:   3'- cGGCAACUa---CUCGCU----CGCGGGC---UUGG- -5'
7669 5' -55.2 NC_001973.1 + 158752 0.68 0.89494
Target:  5'- aGCCGgcGAccGAGCGcGCGCC--GACCu -3'
miRNA:   3'- -CGGCaaCUa-CUCGCuCGCGGgcUUGG- -5'
7669 5' -55.2 NC_001973.1 + 22408 0.68 0.894285
Target:  5'- cGCUGgggGAUGGGgaCGAcgccgccGCGCCCGcGCCc -3'
miRNA:   3'- -CGGCaa-CUACUC--GCU-------CGCGGGCuUGG- -5'
7669 5' -55.2 NC_001973.1 + 107891 0.68 0.888297
Target:  5'- gGCCGUUGGccGAcGCcgaacuGAGCGCCC--ACCg -3'
miRNA:   3'- -CGGCAACUa-CU-CG------CUCGCGGGcuUGG- -5'
7669 5' -55.2 NC_001973.1 + 64864 0.68 0.888297
Target:  5'- cGCCGUcccUGcgG-GCucGCGCCCGAaguGCUg -3'
miRNA:   3'- -CGGCA---ACuaCuCGcuCGCGGGCU---UGG- -5'
7669 5' -55.2 NC_001973.1 + 100924 0.68 0.888297
Target:  5'- aGCUGUUGAgacuGGUGAuggcGCGCUCGGccACCg -3'
miRNA:   3'- -CGGCAACUac--UCGCU----CGCGGGCU--UGG- -5'
7669 5' -55.2 NC_001973.1 + 158384 0.68 0.881433
Target:  5'- cGCCGacucguccGAUc-GCGcccGCGCCCGAGCCg -3'
miRNA:   3'- -CGGCaa------CUAcuCGCu--CGCGGGCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 158621 0.68 0.881433
Target:  5'- cGCCGUUGccGccgccCGGcGCGCCCGAcgACCc -3'
miRNA:   3'- -CGGCAACuaCuc---GCU-CGCGGGCU--UGG- -5'
7669 5' -55.2 NC_001973.1 + 43986 0.68 0.87435
Target:  5'- uGCCGgcGAUccAGCGcAGCGCCCacucGGCCu -3'
miRNA:   3'- -CGGCaaCUAc-UCGC-UCGCGGGc---UUGG- -5'
7669 5' -55.2 NC_001973.1 + 29972 0.68 0.87435
Target:  5'- cGCCGgcucggUGGUGGGCGcGUauaucugcgaGCCCGAcgacgcGCCc -3'
miRNA:   3'- -CGGCa-----ACUACUCGCuCG----------CGGGCU------UGG- -5'
7669 5' -55.2 NC_001973.1 + 115443 0.68 0.872184
Target:  5'- aCCGUUGGUacaagggggacuucGAGCGAcuGCGCCgCGuGCUg -3'
miRNA:   3'- cGGCAACUA--------------CUCGCU--CGCGG-GCuUGG- -5'
7669 5' -55.2 NC_001973.1 + 158827 0.68 0.867055
Target:  5'- aGCCGgcgGccGAGCGcGCGgaCGAGCCg -3'
miRNA:   3'- -CGGCaa-CuaCUCGCuCGCggGCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 44428 0.68 0.867055
Target:  5'- cGCuCGggGAUcGAaCGGGCGCUCGGGCg -3'
miRNA:   3'- -CG-GCaaCUA-CUcGCUCGCGGGCUUGg -5'
7669 5' -55.2 NC_001973.1 + 44461 0.68 0.867055
Target:  5'- cGCuCGggGAUcGAaCGGGCGCUCGGGCg -3'
miRNA:   3'- -CG-GCaaCUA-CUcGCUCGCGGGCUUGg -5'
7669 5' -55.2 NC_001973.1 + 55616 0.68 0.867055
Target:  5'- cGUCGccGAcGAGCGAGCGCgCGuGCa -3'
miRNA:   3'- -CGGCaaCUaCUCGCUCGCGgGCuUGg -5'
7669 5' -55.2 NC_001973.1 + 6925 0.68 0.867055
Target:  5'- cGCUGUgGAac-GCGcuGCGCCUGGACCg -3'
miRNA:   3'- -CGGCAaCUacuCGCu-CGCGGGCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.