miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7670 3' -54 NC_001973.1 + 109575 0.67 0.93648
Target:  5'- ---gGCGGguuucGGGCGCGAgccGUCCACCAg -3'
miRNA:   3'- cuagUGCUa----CUCGUGCUa--CGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 118103 0.67 0.93648
Target:  5'- cGUgACGGUGGGCGCGgcGCUCAagCAg -3'
miRNA:   3'- cUAgUGCUACUCGUGCuaCGGGUg-GU- -5'
7670 3' -54 NC_001973.1 + 114421 0.67 0.931405
Target:  5'- cGGUCGCGAgccUGcGCGCGAgccgGCUCGCgAa -3'
miRNA:   3'- -CUAGUGCU---ACuCGUGCUa---CGGGUGgU- -5'
7670 3' -54 NC_001973.1 + 119305 0.67 0.926083
Target:  5'- cGUCGCGuucaaGAGCGgguCGgcGCCCGCCGc -3'
miRNA:   3'- cUAGUGCua---CUCGU---GCuaCGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 136884 0.67 0.920513
Target:  5'- -cUCgACGGUGGGCAC---GUCCACCAc -3'
miRNA:   3'- cuAG-UGCUACUCGUGcuaCGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 78180 0.67 0.920513
Target:  5'- cAUCAUGcUGGGCACGGgcaUGCgCAUCAa -3'
miRNA:   3'- cUAGUGCuACUCGUGCU---ACGgGUGGU- -5'
7670 3' -54 NC_001973.1 + 157729 0.67 0.920513
Target:  5'- -uUgACGAggugGAGCGCGGUGCgCGCg- -3'
miRNA:   3'- cuAgUGCUa---CUCGUGCUACGgGUGgu -5'
7670 3' -54 NC_001973.1 + 7703 0.67 0.914697
Target:  5'- aGAUU-CGAaacGAGCGCGccGCCCGCCc -3'
miRNA:   3'- -CUAGuGCUa--CUCGUGCuaCGGGUGGu -5'
7670 3' -54 NC_001973.1 + 31416 0.67 0.914697
Target:  5'- cGUCGUGGUGGGCACGA---CCACCGg -3'
miRNA:   3'- cUAGUGCUACUCGUGCUacgGGUGGU- -5'
7670 3' -54 NC_001973.1 + 17064 0.67 0.914697
Target:  5'- ---gGCGGUGAGCAUGcUGUUgGCCAu -3'
miRNA:   3'- cuagUGCUACUCGUGCuACGGgUGGU- -5'
7670 3' -54 NC_001973.1 + 70760 0.68 0.908635
Target:  5'- aGUCAUGGcacuugUGAGCGgGGcgcUGUCCACCAa -3'
miRNA:   3'- cUAGUGCU------ACUCGUgCU---ACGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 126590 0.68 0.895784
Target:  5'- cGAUCACGuccuGgGCGAUGUCgGCCAu -3'
miRNA:   3'- -CUAGUGCuacuCgUGCUACGGgUGGU- -5'
7670 3' -54 NC_001973.1 + 10098 0.68 0.889
Target:  5'- gGAUCGauc-GAGCACGG-GUCCACCAc -3'
miRNA:   3'- -CUAGUgcuaCUCGUGCUaCGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 19834 0.68 0.888309
Target:  5'- gGcgCugGGUGAGCgaGCGGUcuauggcGUCCACCAg -3'
miRNA:   3'- -CuaGugCUACUCG--UGCUA-------CGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 40603 0.68 0.881983
Target:  5'- --aUugGcgGAGCGCGccGCCgACCAg -3'
miRNA:   3'- cuaGugCuaCUCGUGCuaCGGgUGGU- -5'
7670 3' -54 NC_001973.1 + 53931 0.7 0.809225
Target:  5'- --cCACGGUGAGCuCGuccacGUGCCCGCg- -3'
miRNA:   3'- cuaGUGCUACUCGuGC-----UACGGGUGgu -5'
7670 3' -54 NC_001973.1 + 24136 0.7 0.791027
Target:  5'- -cUCGCgGGUGcGCGCGccGCCCGCCu -3'
miRNA:   3'- cuAGUG-CUACuCGUGCuaCGGGUGGu -5'
7670 3' -54 NC_001973.1 + 101958 0.71 0.743105
Target:  5'- cGAUCGUGGUGgcGGCgACGAUGCgCGCCAg -3'
miRNA:   3'- -CUAGUGCUAC--UCG-UGCUACGgGUGGU- -5'
7670 3' -54 NC_001973.1 + 31592 0.72 0.692676
Target:  5'- --cCACGuUGGGCGCcugGCCCACCAc -3'
miRNA:   3'- cuaGUGCuACUCGUGcuaCGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 45203 0.73 0.672073
Target:  5'- cGAUCugGccGGGCGCGAUGCggGCCGc -3'
miRNA:   3'- -CUAGugCuaCUCGUGCUACGggUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.