Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7670 | 5' | -51.6 | NC_001973.1 | + | 131410 | 0.66 | 0.991091 |
|
Target: 5'- aUUGGU-CgCGGUCcgGGUCGUCGCUa -3' miRNA: 3'- gAACUAcG-GCUAGaaCCAGUAGCGGa -5' |
|||||||
| 7670 | 5' | -51.6 | NC_001973.1 | + | 124554 | 0.66 | 0.991091 |
|
Target: 5'- -cUGGUGguaCGAcaagUUUUGcGUCGUCGCCUa -3' miRNA: 3'- gaACUACg--GCU----AGAAC-CAGUAGCGGA- -5' |
|||||||
| 7670 | 5' | -51.6 | NC_001973.1 | + | 27314 | 0.66 | 0.985135 |
|
Target: 5'- --gGAUcGUCGA-CUUGGUCAggcaCGCCa -3' miRNA: 3'- gaaCUA-CGGCUaGAACCAGUa---GCGGa -5' |
|||||||
| 7670 | 5' | -51.6 | NC_001973.1 | + | 87543 | 0.68 | 0.964751 |
|
Target: 5'- --cGGUGCCGGUCgaGGccgCAUCGgCg -3' miRNA: 3'- gaaCUACGGCUAGaaCCa--GUAGCgGa -5' |
|||||||
| 7670 | 5' | -51.6 | NC_001973.1 | + | 81626 | 0.71 | 0.87919 |
|
Target: 5'- --aGcgGgCGAUCUUGGUCGcgcgCGCCg -3' miRNA: 3'- gaaCuaCgGCUAGAACCAGUa---GCGGa -5' |
|||||||
| 7670 | 5' | -51.6 | NC_001973.1 | + | 53297 | 0.74 | 0.726795 |
|
Target: 5'- gCUUGAUGUaguCGAUCUUGGaggcCGUCGUCUg -3' miRNA: 3'- -GAACUACG---GCUAGAACCa---GUAGCGGA- -5' |
|||||||
| 7670 | 5' | -51.6 | NC_001973.1 | + | 132985 | 1.08 | 0.009012 |
|
Target: 5'- cCUUGAUGCCGAUCUUGGUCAUCGCCUu -3' miRNA: 3'- -GAACUACGGCUAGAACCAGUAGCGGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home