Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7672 | 5' | -56 | NC_001973.1 | + | 52673 | 0.66 | 0.900256 |
|
Target: 5'- uGCCGGCCGUUgcUCCAGucgaacuGCGaCCCg- -3' miRNA: 3'- cUGGCUGGCAA--GGGUCuu-----UGC-GGGau -5' |
|||||||
| 7672 | 5' | -56 | NC_001973.1 | + | 158770 | 0.66 | 0.893739 |
|
Target: 5'- cGCCGACCuacacgCCCG---ACGCCCUGu -3' miRNA: 3'- cUGGCUGGcaa---GGGUcuuUGCGGGAU- -5' |
|||||||
| 7672 | 5' | -56 | NC_001973.1 | + | 74290 | 0.66 | 0.886992 |
|
Target: 5'- cGCCGugCGUUCggcaCGGAu-CGCCCg- -3' miRNA: 3'- cUGGCugGCAAGg---GUCUuuGCGGGau -5' |
|||||||
| 7672 | 5' | -56 | NC_001973.1 | + | 95726 | 0.66 | 0.886992 |
|
Target: 5'- cGCCGGCUGUuggCgCAGGGcGCGCCCg- -3' miRNA: 3'- cUGGCUGGCAa--GgGUCUU-UGCGGGau -5' |
|||||||
| 7672 | 5' | -56 | NC_001973.1 | + | 158692 | 0.68 | 0.841956 |
|
Target: 5'- cGGCCGAgCGcgcgCCUAccGACGCCCUGu -3' miRNA: 3'- -CUGGCUgGCaa--GGGUcuUUGCGGGAU- -5' |
|||||||
| 7672 | 5' | -56 | NC_001973.1 | + | 79976 | 0.69 | 0.790087 |
|
Target: 5'- cGAUCG-CCGUUgCCGGGcagaaagucGACGCCCg- -3' miRNA: 3'- -CUGGCuGGCAAgGGUCU---------UUGCGGGau -5' |
|||||||
| 7672 | 5' | -56 | NC_001973.1 | + | 42542 | 0.7 | 0.723249 |
|
Target: 5'- gGAgCGACgGUcaaguuUCCCAGGGACGCCa-- -3' miRNA: 3'- -CUgGCUGgCA------AGGGUCUUUGCGGgau -5' |
|||||||
| 7672 | 5' | -56 | NC_001973.1 | + | 131976 | 0.86 | 0.091941 |
|
Target: 5'- cGACCGACCaUUCCCAGAAACGCCa-- -3' miRNA: 3'- -CUGGCUGGcAAGGGUCUUUGCGGgau -5' |
|||||||
| 7672 | 5' | -56 | NC_001973.1 | + | 131922 | 1.07 | 0.004141 |
|
Target: 5'- cGACCGACCGUUCCCAGAAACGCCCUAu -3' miRNA: 3'- -CUGGCUGGCAAGGGUCUUUGCGGGAU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home