miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7673 3' -56.1 NC_001973.1 + 114435 0.66 0.898036
Target:  5'- -cGCGCGaGCCgGCuCGCGaagcUGGUGUGCu -3'
miRNA:   3'- uuCGCGUcUGG-CGuGUGC----ACCACAUG- -5'
7673 3' -56.1 NC_001973.1 + 138882 0.66 0.898036
Target:  5'- cAGGgGCAcGGCCGCGCcguCGaUGGUGcACu -3'
miRNA:   3'- -UUCgCGU-CUGGCGUGu--GC-ACCACaUG- -5'
7673 3' -56.1 NC_001973.1 + 105769 0.66 0.898036
Target:  5'- gGGGCaGCAcGACCGCGCGCGcGcagaGUACa -3'
miRNA:   3'- -UUCG-CGU-CUGGCGUGUGCaCca--CAUG- -5'
7673 3' -56.1 NC_001973.1 + 95742 0.66 0.891372
Target:  5'- aGGGCGCgcccgccgacaAGAUCGUGCucgGCGUGGccaUGUACg -3'
miRNA:   3'- -UUCGCG-----------UCUGGCGUG---UGCACC---ACAUG- -5'
7673 3' -56.1 NC_001973.1 + 141566 0.66 0.884475
Target:  5'- -cGCGCAaGCuCGCGCucgacacguACGUGGUGaACa -3'
miRNA:   3'- uuCGCGUcUG-GCGUG---------UGCACCACaUG- -5'
7673 3' -56.1 NC_001973.1 + 5151 0.66 0.87735
Target:  5'- uGGUGCAGGCCcaGCugGuUGGUGUccgGCg -3'
miRNA:   3'- uUCGCGUCUGGcgUGugC-ACCACA---UG- -5'
7673 3' -56.1 NC_001973.1 + 25842 0.66 0.870001
Target:  5'- cGGCGCAcGGCgcgcaGCACacgACGUGGUGgcacgGCg -3'
miRNA:   3'- uUCGCGU-CUGg----CGUG---UGCACCACa----UG- -5'
7673 3' -56.1 NC_001973.1 + 18919 0.67 0.838487
Target:  5'- aGGGCGCccgcgAGACCGUGCACaagaucGUGUACa -3'
miRNA:   3'- -UUCGCG-----UCUGGCGUGUGcac---CACAUG- -5'
7673 3' -56.1 NC_001973.1 + 109789 0.67 0.838487
Target:  5'- cGGUGCGuGCUGCACAagugcgugcuCGUGGUGUucgGCa -3'
miRNA:   3'- uUCGCGUcUGGCGUGU----------GCACCACA---UG- -5'
7673 3' -56.1 NC_001973.1 + 138299 0.68 0.806601
Target:  5'- uAGCGCAGACagucgaauauguacaUGCACACGUgcccgucGGcGUGCu -3'
miRNA:   3'- uUCGCGUCUG---------------GCGUGUGCA-------CCaCAUG- -5'
7673 3' -56.1 NC_001973.1 + 100779 0.68 0.785639
Target:  5'- gGAGgGCAG-CgCGCACACGUGGccaGCg -3'
miRNA:   3'- -UUCgCGUCuG-GCGUGUGCACCacaUG- -5'
7673 3' -56.1 NC_001973.1 + 94554 0.68 0.766802
Target:  5'- -uGgGCGGACCGCaacuACGCGcUGGUGg-- -3'
miRNA:   3'- uuCgCGUCUGGCG----UGUGC-ACCACaug -5'
7673 3' -56.1 NC_001973.1 + 95102 0.69 0.747474
Target:  5'- -uGCGCGGGCCGCgacgacuucaaGCugGcGGUGcACg -3'
miRNA:   3'- uuCGCGUCUGGCG-----------UGugCaCCACaUG- -5'
7673 3' -56.1 NC_001973.1 + 52919 0.69 0.747474
Target:  5'- ----cCAGAUCGCGCACGUcgggcggaaaGGUGUACg -3'
miRNA:   3'- uucgcGUCUGGCGUGUGCA----------CCACAUG- -5'
7673 3' -56.1 NC_001973.1 + 145300 0.69 0.721742
Target:  5'- cGGCGCGGgcACCGCcgaGCugGUGGagcacuacuugaacgUGUGCg -3'
miRNA:   3'- uUCGCGUC--UGGCG---UGugCACC---------------ACAUG- -5'
7673 3' -56.1 NC_001973.1 + 39315 0.69 0.717732
Target:  5'- -uGCGuCGGGCuCGCGCAC-UGGUGUcGCa -3'
miRNA:   3'- uuCGC-GUCUG-GCGUGUGcACCACA-UG- -5'
7673 3' -56.1 NC_001973.1 + 122540 0.7 0.707656
Target:  5'- cGAGCgGCGG-CgGCGCugGUGGUGg-- -3'
miRNA:   3'- -UUCG-CGUCuGgCGUGugCACCACaug -5'
7673 3' -56.1 NC_001973.1 + 95834 0.7 0.706644
Target:  5'- cGGGCGCGGcgacgggcccgguGCCGgGCACGUGGgaggACg -3'
miRNA:   3'- -UUCGCGUC-------------UGGCgUGUGCACCaca-UG- -5'
7673 3' -56.1 NC_001973.1 + 7927 0.7 0.656478
Target:  5'- gGAGCGCGuGugCGCGgccgGCGUGGUGcACg -3'
miRNA:   3'- -UUCGCGU-CugGCGUg---UGCACCACaUG- -5'
7673 3' -56.1 NC_001973.1 + 105226 0.72 0.573968
Target:  5'- uGGCGCGGAaCGCGCAUGUGuccGUGCg -3'
miRNA:   3'- uUCGCGUCUgGCGUGUGCACca-CAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.