miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7673 5' -48.8 NC_001973.1 + 31459 0.66 0.998626
Target:  5'- ---aAGAUCACGCccgacucgaagcCGACGGUCUGCg -3'
miRNA:   3'- aacaUUUGGUGCGu-----------GCUGUUAGACGa -5'
7673 5' -48.8 NC_001973.1 + 64068 0.66 0.998397
Target:  5'- -cGUuuACggaCGCGCACGACGAgCUGUUc -3'
miRNA:   3'- aaCAuuUG---GUGCGUGCUGUUaGACGA- -5'
7673 5' -48.8 NC_001973.1 + 100379 0.66 0.998303
Target:  5'- -cGU-AGCCuCGCGCGucgccgcccaccacACGAUCUGCg -3'
miRNA:   3'- aaCAuUUGGuGCGUGC--------------UGUUAGACGa -5'
7673 5' -48.8 NC_001973.1 + 96559 0.66 0.998065
Target:  5'- aUGUucAUUugG-GCGACGAUCUGCg -3'
miRNA:   3'- aACAuuUGGugCgUGCUGUUAGACGa -5'
7673 5' -48.8 NC_001973.1 + 117209 0.67 0.996706
Target:  5'- -cGUAGACCAaGCGCGGCGGcUUggGCUu -3'
miRNA:   3'- aaCAUUUGGUgCGUGCUGUU-AGa-CGA- -5'
7673 5' -48.8 NC_001973.1 + 46111 0.67 0.996706
Target:  5'- -cGUGc-CCGCGCugGACGcgCgGCUg -3'
miRNA:   3'- aaCAUuuGGUGCGugCUGUuaGaCGA- -5'
7673 5' -48.8 NC_001973.1 + 82618 0.67 0.996706
Target:  5'- -gGUAuauuaacGCCGacgugaGCGuCGACAAUCUGCUg -3'
miRNA:   3'- aaCAUu------UGGUg-----CGU-GCUGUUAGACGA- -5'
7673 5' -48.8 NC_001973.1 + 83816 0.67 0.996107
Target:  5'- --cUGGGCCGCGCGCGGCGGa--GCUc -3'
miRNA:   3'- aacAUUUGGUGCGUGCUGUUagaCGA- -5'
7673 5' -48.8 NC_001973.1 + 6945 0.67 0.994642
Target:  5'- --cUGGACCgGCGCACGGCcuccggCUGCUc -3'
miRNA:   3'- aacAUUUGG-UGCGUGCUGuua---GACGA- -5'
7673 5' -48.8 NC_001973.1 + 110960 0.68 0.993757
Target:  5'- -cGUGAACCAC-CACGAgggaaUGAUUUGCa -3'
miRNA:   3'- aaCAUUUGGUGcGUGCU-----GUUAGACGa -5'
7673 5' -48.8 NC_001973.1 + 31586 0.68 0.992759
Target:  5'- -aGUAGGCCACGUugGGCGccugGCc -3'
miRNA:   3'- aaCAUUUGGUGCGugCUGUuagaCGa -5'
7673 5' -48.8 NC_001973.1 + 106890 0.68 0.992759
Target:  5'- ---cGAACCguGCGCGCGGCAAUCgaccgaaGCg -3'
miRNA:   3'- aacaUUUGG--UGCGUGCUGUUAGa------CGa -5'
7673 5' -48.8 NC_001973.1 + 76863 0.69 0.987433
Target:  5'- ---aGAACCGCGCGCGcaucauCAGUCUGa- -3'
miRNA:   3'- aacaUUUGGUGCGUGCu-----GUUAGACga -5'
7673 5' -48.8 NC_001973.1 + 111496 0.69 0.983831
Target:  5'- -----cGCCgGCGCGCGACAA-CUGCg -3'
miRNA:   3'- aacauuUGG-UGCGUGCUGUUaGACGa -5'
7673 5' -48.8 NC_001973.1 + 104225 0.7 0.971452
Target:  5'- -aGgcGAUCGCGCuCGGCGcgCUGCg -3'
miRNA:   3'- aaCauUUGGUGCGuGCUGUuaGACGa -5'
7673 5' -48.8 NC_001973.1 + 1572 0.7 0.968326
Target:  5'- aUGgcGACCugGCGCGACGAaUUGa- -3'
miRNA:   3'- aACauUUGGugCGUGCUGUUaGACga -5'
7673 5' -48.8 NC_001973.1 + 132092 0.7 0.968326
Target:  5'- aUGUcuuuGAACaCAUGCGCGcACAGUUUGCa -3'
miRNA:   3'- aACA----UUUG-GUGCGUGC-UGUUAGACGa -5'
7673 5' -48.8 NC_001973.1 + 75920 0.71 0.944395
Target:  5'- aUUGUGgugaucgucauGAUCGCGUGCGACGAgugCUGCa -3'
miRNA:   3'- -AACAU-----------UUGGUGCGUGCUGUUa--GACGa -5'
7673 5' -48.8 NC_001973.1 + 52843 0.72 0.934327
Target:  5'- cUUGUAGacgGCCGCGCGCGGcCGGUCgguccaGCUg -3'
miRNA:   3'- -AACAUU---UGGUGCGUGCU-GUUAGa-----CGA- -5'
7673 5' -48.8 NC_001973.1 + 74315 0.73 0.910941
Target:  5'- -----cGCCACGCACucgaGCAGUCUGCg -3'
miRNA:   3'- aacauuUGGUGCGUGc---UGUUAGACGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.