miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7675 5' -52.6 NC_001973.1 + 129014 0.66 0.987528
Target:  5'- cGGCcAGGGUCGAUaaaGGUcaaaccgaugacaUCAuGCCUa -3'
miRNA:   3'- -CCGaUCCCAGCUAgc-UCA-------------AGUuCGGG- -5'
7675 5' -52.6 NC_001973.1 + 52192 0.67 0.978086
Target:  5'- cGGC-GGGGUCGcgCGAc-UCGAGCa- -3'
miRNA:   3'- -CCGaUCCCAGCuaGCUcaAGUUCGgg -5'
7675 5' -52.6 NC_001973.1 + 129656 0.67 0.973002
Target:  5'- cGGCcGGuGGUCGuGUCGAaagCgAAGCCCg -3'
miRNA:   3'- -CCGaUC-CCAGC-UAGCUcaaG-UUCGGG- -5'
7675 5' -52.6 NC_001973.1 + 111248 0.67 0.973002
Target:  5'- gGGCgagGGGGUCGAcgCGGacgCGcuGCCCg -3'
miRNA:   3'- -CCGa--UCCCAGCUa-GCUcaaGUu-CGGG- -5'
7675 5' -52.6 NC_001973.1 + 150933 0.67 0.967114
Target:  5'- cGCcGGGGUCGuUgGAGgucagacUCGAGCUCg -3'
miRNA:   3'- cCGaUCCCAGCuAgCUCa------AGUUCGGG- -5'
7675 5' -52.6 NC_001973.1 + 160350 0.68 0.963853
Target:  5'- ---------aGAUCGGGUUCGAGCCCg -3'
miRNA:   3'- ccgaucccagCUAGCUCAAGUUCGGG- -5'
7675 5' -52.6 NC_001973.1 + 146081 0.68 0.956666
Target:  5'- cGGCUcGGG-CGggCGGGgacuaaggUCGGGCCg -3'
miRNA:   3'- -CCGAuCCCaGCuaGCUCa-------AGUUCGGg -5'
7675 5' -52.6 NC_001973.1 + 127389 0.68 0.947267
Target:  5'- cGGCaAGGGgCaAUCGAGUUCAAaccgaugacaucauGCCUa -3'
miRNA:   3'- -CCGaUCCCaGcUAGCUCAAGUU--------------CGGG- -5'
7675 5' -52.6 NC_001973.1 + 109567 0.69 0.944158
Target:  5'- cGGCgcGGGgCGGguuUCGGGcgCGAGCCg -3'
miRNA:   3'- -CCGauCCCaGCU---AGCUCaaGUUCGGg -5'
7675 5' -52.6 NC_001973.1 + 67814 0.69 0.939514
Target:  5'- uGGCc-GGGUCGGUCugcaccGAGUcgcugcUCuGGCCCa -3'
miRNA:   3'- -CCGauCCCAGCUAG------CUCA------AGuUCGGG- -5'
7675 5' -52.6 NC_001973.1 + 124808 0.69 0.93158
Target:  5'- gGGCcGGGGccUCGAUCGgacggucgaggAGUUCGgcaagcgcaugagggAGCCCu -3'
miRNA:   3'- -CCGaUCCC--AGCUAGC-----------UCAAGU---------------UCGGG- -5'
7675 5' -52.6 NC_001973.1 + 122634 0.69 0.929499
Target:  5'- gGGCgccGGcGUCGGUCGAGa--GAGCaCCu -3'
miRNA:   3'- -CCGau-CC-CAGCUAGCUCaagUUCG-GG- -5'
7675 5' -52.6 NC_001973.1 + 130985 0.69 0.91851
Target:  5'- cGGCgAGGGUCGAUUgGAGgUCAAcaucguGCCg -3'
miRNA:   3'- -CCGaUCCCAGCUAG-CUCaAGUU------CGGg -5'
7675 5' -52.6 NC_001973.1 + 73778 0.7 0.900212
Target:  5'- cGGC-GGGGaacUCGAgCGAGUUCGccaGGCUCu -3'
miRNA:   3'- -CCGaUCCC---AGCUaGCUCAAGU---UCGGG- -5'
7675 5' -52.6 NC_001973.1 + 130730 0.74 0.721388
Target:  5'- cGGCcGGGG-CaAUCGAGUUCAAGaCCg -3'
miRNA:   3'- -CCGaUCCCaGcUAGCUCAAGUUCgGG- -5'
7675 5' -52.6 NC_001973.1 + 72154 0.74 0.721388
Target:  5'- cGGCaaaGGUCGAUCGAGUUCAAaUCUa -3'
miRNA:   3'- -CCGaucCCAGCUAGCUCAAGUUcGGG- -5'
7675 5' -52.6 NC_001973.1 + 71972 0.75 0.680871
Target:  5'- cGGCgAGGGUCaAUCGAGUUCAAaUCUa -3'
miRNA:   3'- -CCGaUCCCAGcUAGCUCAAGUUcGGG- -5'
7675 5' -52.6 NC_001973.1 + 10090 0.75 0.66033
Target:  5'- cGGUgAGGGgaUCGAUCGAGcaCGGGUCCa -3'
miRNA:   3'- -CCGaUCCC--AGCUAGCUCaaGUUCGGG- -5'
7675 5' -52.6 NC_001973.1 + 72398 0.75 0.66033
Target:  5'- cGCUAGGGUCaacaGAGUUCAAaugacaucauGCCCa -3'
miRNA:   3'- cCGAUCCCAGcuagCUCAAGUU----------CGGG- -5'
7675 5' -52.6 NC_001973.1 + 129180 0.76 0.598421
Target:  5'- cGGCaAGGGUCaAUgGAGUUCAAaCCCg -3'
miRNA:   3'- -CCGaUCCCAGcUAgCUCAAGUUcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.