miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7676 3' -51.5 NC_001973.1 + 2703 0.71 0.882772
Target:  5'- ---aAUCUUACGCGUCGGcCGGGg--- -3'
miRNA:   3'- auccUAGAAUGCGCAGCC-GCCUauug -5'
7676 3' -51.5 NC_001973.1 + 2817 0.83 0.29537
Target:  5'- gUAGGAUUUUACGCGUCGGcCGGGg--- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCC-GCCUauug -5'
7676 3' -51.5 NC_001973.1 + 12129 0.72 0.835336
Target:  5'- gUAGGAUUUUACGCGUCuGcCGGGg--- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGcC-GCCUauug -5'
7676 3' -51.5 NC_001973.1 + 12207 0.7 0.921717
Target:  5'- gUAGGAUUUUACGUGcCGGCcaGGGUc-- -3'
miRNA:   3'- -AUCCUAGAAUGCGCaGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 12285 0.7 0.921717
Target:  5'- gUAGGAUUUUACGUGcCGGCcaGGGUc-- -3'
miRNA:   3'- -AUCCUAGAAUGCGCaGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 12364 0.82 0.356389
Target:  5'- gUAGGAUUUUACGCGUCGGCaaGGGUc-- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 12442 0.83 0.29537
Target:  5'- gUAGGAUUUUACGCGUCGGcCGGGg--- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCC-GCCUauug -5'
7676 3' -51.5 NC_001973.1 + 12505 0.67 0.982335
Target:  5'- -cGGAggUUUACGCGUCGGCcGGcucaaauugAACg -3'
miRNA:   3'- auCCUa-GAAUGCGCAGCCG-CCua-------UUG- -5'
7676 3' -51.5 NC_001973.1 + 16377 0.82 0.356389
Target:  5'- gUAGGAUUUUACGCGUCGGCuaGGGUc-- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 16536 0.7 0.909736
Target:  5'- --aGAUUUUACGCGUCGGCuaGGGUc-- -3'
miRNA:   3'- aucCUAGAAUGCGCAGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 20979 0.82 0.356389
Target:  5'- gUAGGAUUUUACGCGUCGGCuaGGGUc-- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 21078 0.88 0.15272
Target:  5'- gUAGGAUCUUACGCGUCGGcCGGGg--- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCC-GCCUauug -5'
7676 3' -51.5 NC_001973.1 + 21176 0.83 0.29537
Target:  5'- gUAGGAUUUUACGCGUCGGcCGGGg--- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCC-GCCUauug -5'
7676 3' -51.5 NC_001973.1 + 63510 0.67 0.972608
Target:  5'- gAGGAUCUggAC---UCGGCGGAUAGu -3'
miRNA:   3'- aUCCUAGAa-UGcgcAGCCGCCUAUUg -5'
7676 3' -51.5 NC_001973.1 + 71959 0.77 0.595247
Target:  5'- --aGAUCUUACGCGUCGGCGaGGg--- -3'
miRNA:   3'- aucCUAGAAUGCGCAGCCGC-CUauug -5'
7676 3' -51.5 NC_001973.1 + 72046 0.72 0.852018
Target:  5'- --aGAUUUUACGCGUCGGCGaGGg--- -3'
miRNA:   3'- aucCUAGAAUGCGCAGCCGC-CUauug -5'
7676 3' -51.5 NC_001973.1 + 72138 0.83 0.288342
Target:  5'- gUAGGAUCUUACGCGUCGGCa------ -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCCGccuauug -5'
7676 3' -51.5 NC_001973.1 + 72479 0.78 0.522662
Target:  5'- -cGGAcgcguaaaaUCUUACGCGUCGGcCGGGUcGCg -3'
miRNA:   3'- auCCU---------AGAAUGCGCAGCC-GCCUAuUG- -5'
7676 3' -51.5 NC_001973.1 + 81171 0.7 0.909736
Target:  5'- -cGGAUCggGCGUcggGUCGGCGGcggcGACg -3'
miRNA:   3'- auCCUAGaaUGCG---CAGCCGCCua--UUG- -5'
7676 3' -51.5 NC_001973.1 + 86155 0.72 0.826695
Target:  5'- gAGGAUCgcaaacACGCGUgGGUGGAccugcUGGCg -3'
miRNA:   3'- aUCCUAGaa----UGCGCAgCCGCCU-----AUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.