miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7676 3' -51.5 NC_001973.1 + 96575 0.66 0.991741
Target:  5'- --cGAUC-UGCGCGguggCGGCGGcgcUGGCg -3'
miRNA:   3'- aucCUAGaAUGCGCa---GCCGCCu--AUUG- -5'
7676 3' -51.5 NC_001973.1 + 105366 0.7 0.903366
Target:  5'- -cGGcgCggAgGCGUCGGCGGcuUGACg -3'
miRNA:   3'- auCCuaGaaUgCGCAGCCGCCu-AUUG- -5'
7676 3' -51.5 NC_001973.1 + 109311 0.68 0.966506
Target:  5'- cGGGGUCgaggaGCGCGUCGcGCGcGAaccggAACa -3'
miRNA:   3'- aUCCUAGaa---UGCGCAGC-CGC-CUa----UUG- -5'
7676 3' -51.5 NC_001973.1 + 111254 0.66 0.991035
Target:  5'- gGGGGUCgacgcggACGCGcugcccgugggcaacUCGGUGGugGUGGCg -3'
miRNA:   3'- aUCCUAGaa-----UGCGC---------------AGCCGCC--UAUUG- -5'
7676 3' -51.5 NC_001973.1 + 123730 0.67 0.975338
Target:  5'- -uGGGUUUgGCGCG-CGGCGaGAUcGCa -3'
miRNA:   3'- auCCUAGAaUGCGCaGCCGC-CUAuUG- -5'
7676 3' -51.5 NC_001973.1 + 127529 0.7 0.903366
Target:  5'- gUAGGAUUUUACGUGcCGGCaaGGGUcGAUg -3'
miRNA:   3'- -AUCCUAGAAUGCGCaGCCG--CCUA-UUG- -5'
7676 3' -51.5 NC_001973.1 + 128998 0.82 0.33251
Target:  5'- gUAGGAUUUUACGCGUCGGCcaGGGUcGAUa -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCCG--CCUA-UUG- -5'
7676 3' -51.5 NC_001973.1 + 129164 0.87 0.178761
Target:  5'- gUAGGAUCUUACGCGUCGGCaaGGGUcAAUg -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCCG--CCUA-UUG- -5'
7676 3' -51.5 NC_001973.1 + 129246 0.75 0.6797
Target:  5'- --aGAUCUUACGCGUCGGCaaGGGUc-- -3'
miRNA:   3'- aucCUAGAAUGCGCAGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 129320 0.74 0.741524
Target:  5'- gUAGGAUUUUACGCGcCGGCaaGGGUcGAUa -3'
miRNA:   3'- -AUCCUAGAAUGCGCaGCCG--CCUA-UUG- -5'
7676 3' -51.5 NC_001973.1 + 130501 1.09 0.00739
Target:  5'- gUAGGAUCUUACGCGUCGGCGGAUAACa -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCCGCCUAUUG- -5'
7676 3' -51.5 NC_001973.1 + 130560 0.72 0.852018
Target:  5'- --aGAUUUUACGCGUCGGcCGGGg--- -3'
miRNA:   3'- aucCUAGAAUGCGCAGCC-GCCUauug -5'
7676 3' -51.5 NC_001973.1 + 130635 0.7 0.921717
Target:  5'- gUAGGAUUUUACGUGcCGGCaaGGGUc-- -3'
miRNA:   3'- -AUCCUAGAAUGCGCaGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 130714 0.84 0.274679
Target:  5'- gUAGGAUUUUACGCGUCGGcCGGG--GCa -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCC-GCCUauUG- -5'
7676 3' -51.5 NC_001973.1 + 130792 0.83 0.29537
Target:  5'- gUAGGAUUUUACGCGUCGGcCGGGg--- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCC-GCCUauug -5'
7676 3' -51.5 NC_001973.1 + 130890 0.82 0.356389
Target:  5'- gUAGGAUUUUACGCGUCGGCuaGGGUc-- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 130972 0.77 0.595247
Target:  5'- --aGAUCUUACGCGUCGGCGaGGg--- -3'
miRNA:   3'- aucCUAGAAUGCGCAGCCGC-CUauug -5'
7676 3' -51.5 NC_001973.1 + 135551 0.68 0.96312
Target:  5'- aAGGAUaaaAUGCGUCGGCuGAaGGCg -3'
miRNA:   3'- aUCCUAgaaUGCGCAGCCGcCUaUUG- -5'
7676 3' -51.5 NC_001973.1 + 151368 0.88 0.15272
Target:  5'- gUAGGAUCUUACGCGUCGGcCGGGg--- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCC-GCCUauug -5'
7676 3' -51.5 NC_001973.1 + 160406 0.71 0.875426
Target:  5'- --aGAUUUUACGCGUCGGCcGGUGu- -3'
miRNA:   3'- aucCUAGAAUGCGCAGCCGcCUAUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.