Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7676 | 3' | -51.5 | NC_001973.1 | + | 160481 | 0.7 | 0.903366 |
Target: 5'- gUAGGAUUUUACGUGcCGGCcaGGGUcGAUg -3' miRNA: 3'- -AUCCUAGAAUGCGCaGCCG--CCUA-UUG- -5' |
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7676 | 3' | -51.5 | NC_001973.1 | + | 160562 | 0.7 | 0.909736 |
Target: 5'- --aGAUUUUACGCGUCGGCuaGGGUc-- -3' miRNA: 3'- aucCUAGAAUGCGCAGCCG--CCUAuug -5' |
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7676 | 3' | -51.5 | NC_001973.1 | + | 160641 | 0.74 | 0.741524 |
Target: 5'- --aGAUUUUACGCGUCGGCuaGGGUcAACa -3' miRNA: 3'- aucCUAGAAUGCGCAGCCG--CCUA-UUG- -5' |
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7676 | 3' | -51.5 | NC_001973.1 | + | 160716 | 0.73 | 0.771195 |
Target: 5'- gUAGGAUUUUACGCGcCGGCaaGGGUc-- -3' miRNA: 3'- -AUCCUAGAAUGCGCaGCCG--CCUAuug -5' |
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7676 | 3' | -51.5 | NC_001973.1 | + | 160815 | 0.85 | 0.236802 |
Target: 5'- gUAGGAUUUUACGCGUCGGcCGGAg--- -3' miRNA: 3'- -AUCCUAGAAUGCGCAGCC-GCCUauug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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