miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7676 3' -51.5 NC_001973.1 + 12129 0.72 0.835336
Target:  5'- gUAGGAUUUUACGCGUCuGcCGGGg--- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGcC-GCCUauug -5'
7676 3' -51.5 NC_001973.1 + 86155 0.72 0.826695
Target:  5'- gAGGAUCgcaaacACGCGUgGGUGGAccugcUGGCg -3'
miRNA:   3'- aUCCUAGaa----UGCGCAgCCGCCU-----AUUG- -5'
7676 3' -51.5 NC_001973.1 + 160716 0.73 0.771195
Target:  5'- gUAGGAUUUUACGCGcCGGCaaGGGUc-- -3'
miRNA:   3'- -AUCCUAGAAUGCGCaGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 160641 0.74 0.741524
Target:  5'- --aGAUUUUACGCGUCGGCuaGGGUcAACa -3'
miRNA:   3'- aucCUAGAAUGCGCAGCCG--CCUA-UUG- -5'
7676 3' -51.5 NC_001973.1 + 129320 0.74 0.741524
Target:  5'- gUAGGAUUUUACGCGcCGGCaaGGGUcGAUa -3'
miRNA:   3'- -AUCCUAGAAUGCGCaGCCG--CCUA-UUG- -5'
7676 3' -51.5 NC_001973.1 + 129246 0.75 0.6797
Target:  5'- --aGAUCUUACGCGUCGGCaaGGGUc-- -3'
miRNA:   3'- aucCUAGAAUGCGCAGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 71959 0.77 0.595247
Target:  5'- --aGAUCUUACGCGUCGGCGaGGg--- -3'
miRNA:   3'- aucCUAGAAUGCGCAGCCGC-CUauug -5'
7676 3' -51.5 NC_001973.1 + 130972 0.77 0.595247
Target:  5'- --aGAUCUUACGCGUCGGCGaGGg--- -3'
miRNA:   3'- aucCUAGAAUGCGCAGCCGC-CUauug -5'
7676 3' -51.5 NC_001973.1 + 72479 0.78 0.522662
Target:  5'- -cGGAcgcguaaaaUCUUACGCGUCGGcCGGGUcGCg -3'
miRNA:   3'- auCCU---------AGAAUGCGCAGCC-GCCUAuUG- -5'
7676 3' -51.5 NC_001973.1 + 12364 0.82 0.356389
Target:  5'- gUAGGAUUUUACGCGUCGGCaaGGGUc-- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 16377 0.82 0.356389
Target:  5'- gUAGGAUUUUACGCGUCGGCuaGGGUc-- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 20979 0.82 0.356389
Target:  5'- gUAGGAUUUUACGCGUCGGCuaGGGUc-- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 130890 0.82 0.356389
Target:  5'- gUAGGAUUUUACGCGUCGGCuaGGGUc-- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 128998 0.82 0.33251
Target:  5'- gUAGGAUUUUACGCGUCGGCcaGGGUcGAUa -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCCG--CCUA-UUG- -5'
7676 3' -51.5 NC_001973.1 + 2817 0.83 0.29537
Target:  5'- gUAGGAUUUUACGCGUCGGcCGGGg--- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCC-GCCUauug -5'
7676 3' -51.5 NC_001973.1 + 12442 0.83 0.29537
Target:  5'- gUAGGAUUUUACGCGUCGGcCGGGg--- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCC-GCCUauug -5'
7676 3' -51.5 NC_001973.1 + 21176 0.83 0.29537
Target:  5'- gUAGGAUUUUACGCGUCGGcCGGGg--- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCC-GCCUauug -5'
7676 3' -51.5 NC_001973.1 + 130792 0.83 0.29537
Target:  5'- gUAGGAUUUUACGCGUCGGcCGGGg--- -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCC-GCCUauug -5'
7676 3' -51.5 NC_001973.1 + 72138 0.83 0.288342
Target:  5'- gUAGGAUCUUACGCGUCGGCa------ -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCCGccuauug -5'
7676 3' -51.5 NC_001973.1 + 130714 0.84 0.274679
Target:  5'- gUAGGAUUUUACGCGUCGGcCGGG--GCa -3'
miRNA:   3'- -AUCCUAGAAUGCGCAGCC-GCCUauUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.