miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7676 5' -55.7 NC_001973.1 + 130536 1.06 0.004804
Target:  5'- uAAACCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUUGGCUCGAGCCGCCUGCGCAUUCU- -5'
7676 5' -55.7 NC_001973.1 + 130614 1.06 0.005222
Target:  5'- uAAACCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUUGGCUCGAGCCGCCUGCGCAUUCU- -5'
7676 5' -55.7 NC_001973.1 + 127352 1.02 0.008853
Target:  5'- uAAACUGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUUGGCUCGAGCCGCCUGCGCAUUCU- -5'
7676 5' -55.7 NC_001973.1 + 160538 1.02 0.008853
Target:  5'- uAAACUGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUUGGCUCGAGCCGCCUGCGCAUUCU- -5'
7676 5' -55.7 NC_001973.1 + 20958 1.02 0.009622
Target:  5'- uAAACUGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUUGGCUCGAGCCGCCUGCGCAUUCU- -5'
7676 5' -55.7 NC_001973.1 + 160460 1.02 0.009622
Target:  5'- uAAACUGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUUGGCUCGAGCCGCCUGCGCAUUCU- -5'
7676 5' -55.7 NC_001973.1 + 12186 1.02 0.009622
Target:  5'- uAAACUGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUUGGCUCGAGCCGCCUGCGCAUUCU- -5'
7676 5' -55.7 NC_001973.1 + 127508 1.01 0.011364
Target:  5'- uAAACUGAGCUCGGCGGGCGCGUAGGAu -3'
miRNA:   3'- -UUUGGCUCGAGCCGCCUGCGCAUUCU- -5'
7676 5' -55.7 NC_001973.1 + 160616 1 0.01342
Target:  5'- cAAACuCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUUG-GCUCGAGCCGCCUGCGCAUUCU- -5'
7676 5' -55.7 NC_001973.1 + 129221 1 0.01342
Target:  5'- cAAACuCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUUG-GCUCGAGCCGCCUGCGCAUUCU- -5'
7676 5' -55.7 NC_001973.1 + 130947 1 0.01342
Target:  5'- cAAACuCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUUG-GCUCGAGCCGCCUGCGCAUUCU- -5'
7676 5' -55.7 NC_001973.1 + 160381 1 0.01342
Target:  5'- cAAGCuCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUUG-GCUCGAGCCGCCUGCGCAUUCU- -5'
7676 5' -55.7 NC_001973.1 + 127429 0.99 0.013796
Target:  5'- uAAACuCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUUG-GCUCGAGCCGCCUGCGCAUUCU- -5'
7676 5' -55.7 NC_001973.1 + 151061 0.99 0.014184
Target:  5'- cAGACuCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUUG-GCUCGAGCCGCCUGCGCAUUCU- -5'
7676 5' -55.7 NC_001973.1 + 129298 0.99 0.014582
Target:  5'- cAAACuCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUUG-GCUCGAGCCGCCUGCGCAUUCU- -5'
7676 5' -55.7 NC_001973.1 + 12342 0.99 0.014582
Target:  5'- cAAACuCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUUG-GCUCGAGCCGCCUGCGCAUUCU- -5'
7676 5' -55.7 NC_001973.1 + 12107 0.99 0.014582
Target:  5'- cAAACuCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUUG-GCUCGAGCCGCCUGCGCAUUCU- -5'
7676 5' -55.7 NC_001973.1 + 130692 0.99 0.014991
Target:  5'- uAAACuCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUUG-GCUCGAGCCGCCUGCGCAUUCU- -5'
7676 5' -55.7 NC_001973.1 + 130868 0.99 0.014991
Target:  5'- uAAACuCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUUG-GCUCGAGCCGCCUGCGCAUUCU- -5'
7676 5' -55.7 NC_001973.1 + 16355 0.99 0.014991
Target:  5'- uAAACuCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUUG-GCUCGAGCCGCCUGCGCAUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.