miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7677 3' -60.9 NC_001973.1 + 111254 0.66 0.757353
Target:  5'- gGGGGUCgaCGCGgACgCGCUGCccGuGGGc -3'
miRNA:   3'- gCUCCAG--GCGCgUG-GCGACGu-CuCCC- -5'
7677 3' -60.9 NC_001973.1 + 23119 0.66 0.757353
Target:  5'- gCGcGGUUCGUGCACCuGCacaaGCAcAGGGu -3'
miRNA:   3'- -GCuCCAGGCGCGUGG-CGa---CGUcUCCC- -5'
7677 3' -60.9 NC_001973.1 + 35990 0.66 0.748154
Target:  5'- aCGAGGUgaGCgGCAugcCCGCUugguacGUGGAGGGc -3'
miRNA:   3'- -GCUCCAggCG-CGU---GGCGA------CGUCUCCC- -5'
7677 3' -60.9 NC_001973.1 + 4515 0.66 0.720029
Target:  5'- -cGGGUCCGCGUccacguucagguAUCGCaGCAGAGu- -3'
miRNA:   3'- gcUCCAGGCGCG------------UGGCGaCGUCUCcc -5'
7677 3' -60.9 NC_001973.1 + 68601 0.67 0.688382
Target:  5'- aGAGGUCCaGCGCGCCGagGCcGAccagcugacgcaauGGGc -3'
miRNA:   3'- gCUCCAGG-CGCGUGGCgaCGuCU--------------CCC- -5'
7677 3' -60.9 NC_001973.1 + 63645 0.67 0.652358
Target:  5'- uGGGG-CgGCGCGCCGgccgcCUGUuucGAGGGa -3'
miRNA:   3'- gCUCCaGgCGCGUGGC-----GACGu--CUCCC- -5'
7677 3' -60.9 NC_001973.1 + 136267 0.68 0.632776
Target:  5'- gGAGGcggucuugaCCGCcugcacGCACCGCUGCAGGuagacgagacucGGGu -3'
miRNA:   3'- gCUCCa--------GGCG------CGUGGCGACGUCU------------CCC- -5'
7677 3' -60.9 NC_001973.1 + 81631 0.68 0.622982
Target:  5'- gCGAucuuGGUCgCGCGCGCCGCUuCGGccGGc -3'
miRNA:   3'- -GCU----CCAG-GCGCGUGGCGAcGUCucCC- -5'
7677 3' -60.9 NC_001973.1 + 123367 0.68 0.612215
Target:  5'- gCGGGGaucgcacgCCGCGCgcaacgcGCCGUUcgucaaGCGGAGGGc -3'
miRNA:   3'- -GCUCCa-------GGCGCG-------UGGCGA------CGUCUCCC- -5'
7677 3' -60.9 NC_001973.1 + 106963 0.69 0.574234
Target:  5'- cCGGGcGcgcUCggCGUGCGCgCGCUGCAGAGGa -3'
miRNA:   3'- -GCUC-C---AG--GCGCGUG-GCGACGUCUCCc -5'
7677 3' -60.9 NC_001973.1 + 17870 0.73 0.355202
Target:  5'- aCGAGGcgUCCGCGUcgcGCCGCUGCgcuucaauaaaaAGAucGGGa -3'
miRNA:   3'- -GCUCC--AGGCGCG---UGGCGACG------------UCU--CCC- -5'
7677 3' -60.9 NC_001973.1 + 129769 1.09 0.001157
Target:  5'- cCGAGGUCCGCGCACCGCUGCAGAGGGu -3'
miRNA:   3'- -GCUCCAGGCGCGUGGCGACGUCUCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.