miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7677 5' -48.7 NC_001973.1 + 40158 0.66 0.999277
Target:  5'- aGUUCUcgGCGGucGCGugGCCCGAGc- -3'
miRNA:   3'- gCGGGAaaCGUU--UGCugUGGGUUUug -5'
7677 5' -48.7 NC_001973.1 + 21586 0.66 0.999277
Target:  5'- uGCUCgccgGCcGACGuGCACCCGuuGCu -3'
miRNA:   3'- gCGGGaaa-CGuUUGC-UGUGGGUuuUG- -5'
7677 5' -48.7 NC_001973.1 + 23848 0.66 0.999277
Target:  5'- aGCCCgagcugUGCGAGCuGCuguCCCGcaAGGCg -3'
miRNA:   3'- gCGGGaa----ACGUUUGcUGu--GGGU--UUUG- -5'
7677 5' -48.7 NC_001973.1 + 83445 0.66 0.999277
Target:  5'- uCGCCCggUGCGAcaGCGccGCGCUCGu--- -3'
miRNA:   3'- -GCGGGaaACGUU--UGC--UGUGGGUuuug -5'
7677 5' -48.7 NC_001973.1 + 89681 0.66 0.999179
Target:  5'- aGCCCaugcaccacuugGCGAGCGgACugCCcGAGCg -3'
miRNA:   3'- gCGGGaaa---------CGUUUGC-UGugGGuUUUG- -5'
7677 5' -48.7 NC_001973.1 + 64866 0.66 0.999108
Target:  5'- cCGUCCc-UGCGGGCucGCGCCCGAAGu -3'
miRNA:   3'- -GCGGGaaACGUUUGc-UGUGGGUUUUg -5'
7677 5' -48.7 NC_001973.1 + 140044 0.66 0.998908
Target:  5'- gCGCCCgg-GCGcuCGACGagaCCAucGCg -3'
miRNA:   3'- -GCGGGaaaCGUuuGCUGUg--GGUuuUG- -5'
7677 5' -48.7 NC_001973.1 + 158044 0.66 0.998908
Target:  5'- gCGCCCg-UGCGuagcGACGACucGCCgAGGAUa -3'
miRNA:   3'- -GCGGGaaACGU----UUGCUG--UGGgUUUUG- -5'
7677 5' -48.7 NC_001973.1 + 29241 0.66 0.998908
Target:  5'- aGCag-UUGCAccaccucgucgAugGACACCCAcAGCa -3'
miRNA:   3'- gCGggaAACGU-----------UugCUGUGGGUuUUG- -5'
7677 5' -48.7 NC_001973.1 + 30418 0.66 0.998908
Target:  5'- gCGCCgCgaacUGCcGACGGCACaCGGGACa -3'
miRNA:   3'- -GCGG-Gaa--ACGuUUGCUGUGgGUUUUG- -5'
7677 5' -48.7 NC_001973.1 + 62835 0.66 0.998908
Target:  5'- uCGCUUcgUGCAcgugaAACGGUGCCCGGAACc -3'
miRNA:   3'- -GCGGGaaACGU-----UUGCUGUGGGUUUUG- -5'
7677 5' -48.7 NC_001973.1 + 64610 0.66 0.998908
Target:  5'- gGCCCg--GCGAAaguCGGCGCCgagcaaAAGACg -3'
miRNA:   3'- gCGGGaaaCGUUU---GCUGUGGg-----UUUUG- -5'
7677 5' -48.7 NC_001973.1 + 119180 0.66 0.998908
Target:  5'- gCGCCCgu--CGAGcCGACGCCgaaGAAGCg -3'
miRNA:   3'- -GCGGGaaacGUUU-GCUGUGGg--UUUUG- -5'
7677 5' -48.7 NC_001973.1 + 142413 0.66 0.998669
Target:  5'- aGCCg---GCAGACGAUcguGCCCGgcGAGCc -3'
miRNA:   3'- gCGGgaaaCGUUUGCUG---UGGGU--UUUG- -5'
7677 5' -48.7 NC_001973.1 + 98802 0.66 0.998389
Target:  5'- uGCCCggcGCGAuguccacgcucAUGACGCCCAc--- -3'
miRNA:   3'- gCGGGaaaCGUU-----------UGCUGUGGGUuuug -5'
7677 5' -48.7 NC_001973.1 + 92987 0.66 0.998295
Target:  5'- gCGCCaccuacaacuccgGCGAACuGGCAuCCCGAGACu -3'
miRNA:   3'- -GCGGgaaa---------CGUUUG-CUGU-GGGUUUUG- -5'
7677 5' -48.7 NC_001973.1 + 119073 0.67 0.998059
Target:  5'- aCGCUCUgaGCAGccACGACAUgUGGAACc -3'
miRNA:   3'- -GCGGGAaaCGUU--UGCUGUGgGUUUUG- -5'
7677 5' -48.7 NC_001973.1 + 32223 0.67 0.998023
Target:  5'- gCGCCCcacgGCGccugauuGACgGGCGCCgGAAACg -3'
miRNA:   3'- -GCGGGaaa-CGU-------UUG-CUGUGGgUUUUG- -5'
7677 5' -48.7 NC_001973.1 + 107314 0.67 0.997675
Target:  5'- gGCCCgaUGCuGGCG-CGCCUggAAGGCg -3'
miRNA:   3'- gCGGGaaACGuUUGCuGUGGG--UUUUG- -5'
7677 5' -48.7 NC_001973.1 + 57976 0.67 0.997675
Target:  5'- uCGCCCUUcaUGU--GCGcCACUCGAAAg -3'
miRNA:   3'- -GCGGGAA--ACGuuUGCuGUGGGUUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.