miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7677 5' -48.7 NC_001973.1 + 129811 1.12 0.01005
Target:  5'- uCGCCCUUUGCAAACGACACCCAAAACa -3'
miRNA:   3'- -GCGGGAAACGUUUGCUGUGGGUUUUG- -5'
7677 5' -48.7 NC_001973.1 + 23586 0.73 0.905958
Target:  5'- cCGCCCgcgcUGCGcgccauaAACGACACCaacaAGAGCg -3'
miRNA:   3'- -GCGGGaa--ACGU-------UUGCUGUGGg---UUUUG- -5'
7677 5' -48.7 NC_001973.1 + 64659 0.73 0.912351
Target:  5'- cCGCCUUgaaacgaUGCGAGCcguacugcaaccuGACGCCCAAGAUa -3'
miRNA:   3'- -GCGGGAa------ACGUUUG-------------CUGUGGGUUUUG- -5'
7677 5' -48.7 NC_001973.1 + 107511 0.73 0.912976
Target:  5'- uCGCCCcu--CGAACGGCGCgCGAGACa -3'
miRNA:   3'- -GCGGGaaacGUUUGCUGUGgGUUUUG- -5'
7677 5' -48.7 NC_001973.1 + 17210 0.73 0.930489
Target:  5'- gCGCCCUgcUGUAcGCGAUGCUCGAGAg -3'
miRNA:   3'- -GCGGGAa-ACGUuUGCUGUGGGUUUUg -5'
7677 5' -48.7 NC_001973.1 + 153414 0.72 0.950131
Target:  5'- uCGCaCCgggUGCAGGacCGACGCCCAAc-- -3'
miRNA:   3'- -GCG-GGaa-ACGUUU--GCUGUGGGUUuug -5'
7677 5' -48.7 NC_001973.1 + 88142 0.71 0.962157
Target:  5'- gCGCCCUcgucgGCGGcCGACGCCgCcGAGCa -3'
miRNA:   3'- -GCGGGAaa---CGUUuGCUGUGG-GuUUUG- -5'
7677 5' -48.7 NC_001973.1 + 46493 0.71 0.965673
Target:  5'- uCGCCCgc-GCGGACGGCcucggcGCCCGAcuACg -3'
miRNA:   3'- -GCGGGaaaCGUUUGCUG------UGGGUUu-UG- -5'
7677 5' -48.7 NC_001973.1 + 77268 0.71 0.967993
Target:  5'- gGCCCUgcGCGacgacGACGACGCcgccuccgccgccgCCGAGACg -3'
miRNA:   3'- gCGGGAaaCGU-----UUGCUGUG--------------GGUUUUG- -5'
7677 5' -48.7 NC_001973.1 + 9680 0.71 0.968952
Target:  5'- uGCCCUcgGCGAACGGCggcgcguacGCCaCGGAAa -3'
miRNA:   3'- gCGGGAaaCGUUUGCUG---------UGG-GUUUUg -5'
7677 5' -48.7 NC_001973.1 + 53852 0.71 0.972002
Target:  5'- uCGCCCcg-GCGgcGGCGGCGCCgCcGAGCg -3'
miRNA:   3'- -GCGGGaaaCGU--UUGCUGUGG-GuUUUG- -5'
7677 5' -48.7 NC_001973.1 + 5508 0.7 0.979853
Target:  5'- cCGCCCgc-GCGGACGAUAUUCAucAACc -3'
miRNA:   3'- -GCGGGaaaCGUUUGCUGUGGGUu-UUG- -5'
7677 5' -48.7 NC_001973.1 + 8612 0.7 0.979853
Target:  5'- gGCCgCgccGCGGACGACGCCgcCGAGGCc -3'
miRNA:   3'- gCGG-GaaaCGUUUGCUGUGG--GUUUUG- -5'
7677 5' -48.7 NC_001973.1 + 105869 0.7 0.979853
Target:  5'- aCGCCCUUgaugacggugGC-GACGACGCCgAGcuGGCg -3'
miRNA:   3'- -GCGGGAAa---------CGuUUGCUGUGGgUU--UUG- -5'
7677 5' -48.7 NC_001973.1 + 80986 0.7 0.982065
Target:  5'- cCGCCCUUguagGUgcACGAUugCCGggucGAGCa -3'
miRNA:   3'- -GCGGGAAa---CGuuUGCUGugGGU----UUUG- -5'
7677 5' -48.7 NC_001973.1 + 89913 0.7 0.982065
Target:  5'- cCGUCCg--GCGuGACGACGCCCc-AGCa -3'
miRNA:   3'- -GCGGGaaaCGU-UUGCUGUGGGuuUUG- -5'
7677 5' -48.7 NC_001973.1 + 84036 0.7 0.982065
Target:  5'- cCGCgaUUUGCAAGCGAaAgCCGAGGCg -3'
miRNA:   3'- -GCGggAAACGUUUGCUgUgGGUUUUG- -5'
7677 5' -48.7 NC_001973.1 + 97894 0.7 0.982065
Target:  5'- uCGCCCUUcaUGCAcACGaACACCUccacuuGGCg -3'
miRNA:   3'- -GCGGGAA--ACGUuUGC-UGUGGGuu----UUG- -5'
7677 5' -48.7 NC_001973.1 + 7853 0.7 0.984089
Target:  5'- gCGCCCgu--CGAGCuGGCGCgCCAGGGCg -3'
miRNA:   3'- -GCGGGaaacGUUUG-CUGUG-GGUUUUG- -5'
7677 5' -48.7 NC_001973.1 + 79979 0.69 0.987612
Target:  5'- uCGCCgUUgccggGCAGAaaguCGACGCCCGGGu- -3'
miRNA:   3'- -GCGGgAAa----CGUUU----GCUGUGGGUUUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.