miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7677 5' -48.7 NC_001973.1 + 5508 0.7 0.979853
Target:  5'- cCGCCCgc-GCGGACGAUAUUCAucAACc -3'
miRNA:   3'- -GCGGGaaaCGUUUGCUGUGGGUu-UUG- -5'
7677 5' -48.7 NC_001973.1 + 7853 0.7 0.984089
Target:  5'- gCGCCCgu--CGAGCuGGCGCgCCAGGGCg -3'
miRNA:   3'- -GCGGGaaacGUUUG-CUGUG-GGUUUUG- -5'
7677 5' -48.7 NC_001973.1 + 8612 0.7 0.979853
Target:  5'- gGCCgCgccGCGGACGACGCCgcCGAGGCc -3'
miRNA:   3'- gCGG-GaaaCGUUUGCUGUGG--GUUUUG- -5'
7677 5' -48.7 NC_001973.1 + 9680 0.71 0.968952
Target:  5'- uGCCCUcgGCGAACGGCggcgcguacGCCaCGGAAa -3'
miRNA:   3'- gCGGGAaaCGUUUGCUG---------UGG-GUUUUg -5'
7677 5' -48.7 NC_001973.1 + 17210 0.73 0.930489
Target:  5'- gCGCCCUgcUGUAcGCGAUGCUCGAGAg -3'
miRNA:   3'- -GCGGGAa-ACGUuUGCUGUGGGUUUUg -5'
7677 5' -48.7 NC_001973.1 + 21586 0.66 0.999277
Target:  5'- uGCUCgccgGCcGACGuGCACCCGuuGCu -3'
miRNA:   3'- gCGGGaaa-CGuUUGC-UGUGGGUuuUG- -5'
7677 5' -48.7 NC_001973.1 + 22088 0.67 0.997675
Target:  5'- gCGCCgagUUUUGU-AACGACAUCCAGucGCa -3'
miRNA:   3'- -GCGG---GAAACGuUUGCUGUGGGUUu-UG- -5'
7677 5' -48.7 NC_001973.1 + 23586 0.73 0.905958
Target:  5'- cCGCCCgcgcUGCGcgccauaAACGACACCaacaAGAGCg -3'
miRNA:   3'- -GCGGGaa--ACGU-------UUGCUGUGGg---UUUUG- -5'
7677 5' -48.7 NC_001973.1 + 23848 0.66 0.999277
Target:  5'- aGCCCgagcugUGCGAGCuGCuguCCCGcaAGGCg -3'
miRNA:   3'- gCGGGaa----ACGUUUGcUGu--GGGU--UUUG- -5'
7677 5' -48.7 NC_001973.1 + 29241 0.66 0.998908
Target:  5'- aGCag-UUGCAccaccucgucgAugGACACCCAcAGCa -3'
miRNA:   3'- gCGggaAACGU-----------UugCUGUGGGUuUUG- -5'
7677 5' -48.7 NC_001973.1 + 30418 0.66 0.998908
Target:  5'- gCGCCgCgaacUGCcGACGGCACaCGGGACa -3'
miRNA:   3'- -GCGG-Gaa--ACGuUUGCUGUGgGUUUUG- -5'
7677 5' -48.7 NC_001973.1 + 32223 0.67 0.998023
Target:  5'- gCGCCCcacgGCGccugauuGACgGGCGCCgGAAACg -3'
miRNA:   3'- -GCGGGaaa-CGU-------UUG-CUGUGGgUUUUG- -5'
7677 5' -48.7 NC_001973.1 + 37701 0.69 0.989131
Target:  5'- gGCCCgUUGCGcacucGACGGgCGCCCAc--- -3'
miRNA:   3'- gCGGGaAACGU-----UUGCU-GUGGGUuuug -5'
7677 5' -48.7 NC_001973.1 + 40158 0.66 0.999277
Target:  5'- aGUUCUcgGCGGucGCGugGCCCGAGc- -3'
miRNA:   3'- gCGGGAaaCGUU--UGCugUGGGUUUug -5'
7677 5' -48.7 NC_001973.1 + 45124 0.67 0.997229
Target:  5'- uCGUCCcaaUGCGAGCGAaacguguUCCGAGACa -3'
miRNA:   3'- -GCGGGaa-ACGUUUGCUgu-----GGGUUUUG- -5'
7677 5' -48.7 NC_001973.1 + 46278 0.67 0.996061
Target:  5'- cCGCCCUgcGCAAGuaccgcacggucgUGGCGCUCGGcGCg -3'
miRNA:   3'- -GCGGGAaaCGUUU-------------GCUGUGGGUUuUG- -5'
7677 5' -48.7 NC_001973.1 + 46493 0.71 0.965673
Target:  5'- uCGCCCgc-GCGGACGGCcucggcGCCCGAcuACg -3'
miRNA:   3'- -GCGGGaaaCGUUUGCUG------UGGGUUu-UG- -5'
7677 5' -48.7 NC_001973.1 + 53852 0.71 0.972002
Target:  5'- uCGCCCcg-GCGgcGGCGGCGCCgCcGAGCg -3'
miRNA:   3'- -GCGGGaaaCGU--UUGCUGUGG-GuUUUG- -5'
7677 5' -48.7 NC_001973.1 + 57976 0.67 0.997675
Target:  5'- uCGCCCUUcaUGU--GCGcCACUCGAAAg -3'
miRNA:   3'- -GCGGGAA--ACGuuUGCuGUGGGUUUUg -5'
7677 5' -48.7 NC_001973.1 + 62835 0.66 0.998908
Target:  5'- uCGCUUcgUGCAcgugaAACGGUGCCCGGAACc -3'
miRNA:   3'- -GCGGGaaACGU-----UUGCUGUGGGUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.