miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7678 3' -53.4 NC_001973.1 + 2712 0.97 0.034845
Target:  5'- cGUCGGCcGGGGUCgAUCGGGUUCAAGCc -3'
miRNA:   3'- -CAGCCGuUCCCAG-UAGCCCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 2830 0.97 0.034845
Target:  5'- cGUCGGCcGGGGUCgAUCGGGUUCAAGCc -3'
miRNA:   3'- -CAGCCGuUCCCAG-UAGCCCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 8171 0.67 0.952893
Target:  5'- cGUCGGC--GGGUCGaCGGa--CGAGCg -3'
miRNA:   3'- -CAGCCGuuCCCAGUaGCCcaaGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 12142 0.72 0.750198
Target:  5'- cGUCuGCcGGGGUCaAUCGaGUUCGAGCc -3'
miRNA:   3'- -CAGcCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 12222 0.77 0.496071
Target:  5'- -cCGGCcAGGGUCgAUCGaGUUCAAGCc -3'
miRNA:   3'- caGCCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 12300 0.67 0.956835
Target:  5'- -cCGGCcAGGGUCaAUCGaGUUCAAa- -3'
miRNA:   3'- caGCCGuUCCCAG-UAGCcCAAGUUcg -5'
7678 3' -53.4 NC_001973.1 + 12377 0.91 0.077212
Target:  5'- cGUCGGCAAGGGUCaAUCGaGUUCAAGCc -3'
miRNA:   3'- -CAGCCGUUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 12455 0.83 0.225384
Target:  5'- cGUCGGCcGGGGUCgAUCGaGUUCAAGCc -3'
miRNA:   3'- -CAGCCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 16390 0.83 0.225384
Target:  5'- cGUCGGCuAGGGUCgAUCGaGUUCAAGCc -3'
miRNA:   3'- -CAGCCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 16470 0.77 0.496071
Target:  5'- -cCGGCcGGGGUCaAUCGaGUUCAAGCc -3'
miRNA:   3'- caGCCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 16546 0.83 0.225384
Target:  5'- cGUCGGCuAGGGUCgAUCGaGUUCAAGCc -3'
miRNA:   3'- -CAGCCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 20992 0.83 0.225384
Target:  5'- cGUCGGCuAGGGUCaAUCGaGUUCAAGCc -3'
miRNA:   3'- -CAGCCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 21091 0.83 0.225384
Target:  5'- cGUCGGCcGGGGUCaAUCGaGUUCAAGCc -3'
miRNA:   3'- -CAGCCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 21189 0.97 0.034845
Target:  5'- cGUCGGCcGGGGUCgAUCGGGUUCAAGCc -3'
miRNA:   3'- -CAGCCGuUCCCAG-UAGCCCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 55894 0.68 0.93474
Target:  5'- -gCGGCAGgcucGGGcUCGggcUCGGGcUCGGGCu -3'
miRNA:   3'- caGCCGUU----CCC-AGU---AGCCCaAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 71969 0.8 0.330369
Target:  5'- cGUCGGCGAGGGUCaAUCGaGUUCAAa- -3'
miRNA:   3'- -CAGCCGUUCCCAG-UAGCcCAAGUUcg -5'
7678 3' -53.4 NC_001973.1 + 72056 0.91 0.083736
Target:  5'- cGUCGGCGAGGGUCaAUCGaGUUCAAGCc -3'
miRNA:   3'- -CAGCCGUUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 72151 0.69 0.90019
Target:  5'- cGUCGGCAAaGGUCgAUCGaGUUCAAa- -3'
miRNA:   3'- -CAGCCGUUcCCAG-UAGCcCAAGUUcg -5'
7678 3' -53.4 NC_001973.1 + 72240 0.77 0.496071
Target:  5'- -cCGGCcGGGGUCaAUCGaGUUCAAGCc -3'
miRNA:   3'- caGCCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 81850 0.69 0.90019
Target:  5'- gGUCGaC-GGGGUCGUCGGG--CGAGUa -3'
miRNA:   3'- -CAGCcGuUCCCAGUAGCCCaaGUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.