miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7678 3' -53.4 NC_001973.1 + 127466 0.74 0.627989
Target:  5'- -cCGGCAAGGGUCaAUCGaGUUCAAa- -3'
miRNA:   3'- caGCCGUUCCCAG-UAGCcCAAGUUcg -5'
7678 3' -53.4 NC_001973.1 + 151381 0.75 0.607257
Target:  5'- cGUCGGCcGGGGUCGUCuGaGGUUagaauaacgCGGGCg -3'
miRNA:   3'- -CAGCCGuUCCCAGUAG-C-CCAA---------GUUCG- -5'
7678 3' -53.4 NC_001973.1 + 127544 0.77 0.496071
Target:  5'- -cCGGCAAGGGUCGaUGGaGgUCAAGCc -3'
miRNA:   3'- caGCCGUUCCCAGUaGCC-CaAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 72240 0.77 0.496071
Target:  5'- -cCGGCcGGGGUCaAUCGaGUUCAAGCc -3'
miRNA:   3'- caGCCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 16470 0.77 0.496071
Target:  5'- -cCGGCcGGGGUCaAUCGaGUUCAAGCc -3'
miRNA:   3'- caGCCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 12222 0.77 0.496071
Target:  5'- -cCGGCcAGGGUCgAUCGaGUUCAAGCc -3'
miRNA:   3'- caGCCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 160651 0.78 0.439336
Target:  5'- cGUCGGCuAGGGUCAaCaGaGUUCAAGCc -3'
miRNA:   3'- -CAGCCGuUCCCAGUaGcC-CAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 71969 0.8 0.330369
Target:  5'- cGUCGGCGAGGGUCaAUCGaGUUCAAa- -3'
miRNA:   3'- -CAGCCGUUCCCAG-UAGCcCAAGUUcg -5'
7678 3' -53.4 NC_001973.1 + 130650 0.8 0.330369
Target:  5'- -cCGGCAAGGGUCaAUCGaGUUUAAGCc -3'
miRNA:   3'- caGCCGUUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 129177 0.82 0.254771
Target:  5'- cGUCGGCAAGGGUCAaUGGaGUUCAAa- -3'
miRNA:   3'- -CAGCCGUUCCCAGUaGCC-CAAGUUcg -5'
7678 3' -53.4 NC_001973.1 + 130805 0.83 0.242655
Target:  5'- cGUCGGCcGGGGUCgAUCGaGUUCGAGCc -3'
miRNA:   3'- -CAGCCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 12455 0.83 0.225384
Target:  5'- cGUCGGCcGGGGUCgAUCGaGUUCAAGCc -3'
miRNA:   3'- -CAGCCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 16546 0.83 0.225384
Target:  5'- cGUCGGCuAGGGUCgAUCGaGUUCAAGCc -3'
miRNA:   3'- -CAGCCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 16390 0.83 0.225384
Target:  5'- cGUCGGCuAGGGUCgAUCGaGUUCAAGCc -3'
miRNA:   3'- -CAGCCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 20992 0.83 0.225384
Target:  5'- cGUCGGCuAGGGUCaAUCGaGUUCAAGCc -3'
miRNA:   3'- -CAGCCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 21091 0.83 0.225384
Target:  5'- cGUCGGCcGGGGUCaAUCGaGUUCAAGCc -3'
miRNA:   3'- -CAGCCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 130903 0.83 0.225384
Target:  5'- cGUCGGCuAGGGUCgAUCGaGUUCAAGCc -3'
miRNA:   3'- -CAGCCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 160572 0.83 0.225384
Target:  5'- cGUCGGCuAGGGUCgAUCGaGUUCAAGCc -3'
miRNA:   3'- -CAGCCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 72056 0.91 0.083736
Target:  5'- cGUCGGCGAGGGUCaAUCGaGUUCAAGCc -3'
miRNA:   3'- -CAGCCGUUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 12377 0.91 0.077212
Target:  5'- cGUCGGCAAGGGUCaAUCGaGUUCAAGCc -3'
miRNA:   3'- -CAGCCGUUCCCAG-UAGCcCAAGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.