Results 21 - 40 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7678 | 5' | -57.5 | NC_001973.1 | + | 106668 | 0.67 | 0.809653 |
Target: 5'- -cGCUCGAcgcGCUCGAcgaucucgacgucGCuUUGGCGGGCGc -3' miRNA: 3'- uaCGGGUU---UGAGCU-------------CG-AGCCGCCUGC- -5' |
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7678 | 5' | -57.5 | NC_001973.1 | + | 7258 | 0.67 | 0.810523 |
Target: 5'- gAUGCgCAg---CGGGCUCGGCGcGCGg -3' miRNA: 3'- -UACGgGUuugaGCUCGAGCCGCcUGC- -5' |
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7678 | 5' | -57.5 | NC_001973.1 | + | 56281 | 0.67 | 0.810523 |
Target: 5'- -cGCCCucggauacuAACcCGAGCUCGGCgccGGAUu -3' miRNA: 3'- uaCGGGu--------UUGaGCUCGAGCCG---CCUGc -5' |
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7678 | 5' | -57.5 | NC_001973.1 | + | 10480 | 0.67 | 0.819137 |
Target: 5'- -cGCCCGuGCUgGGGUUgcaCGaGCGGGCGc -3' miRNA: 3'- uaCGGGUuUGAgCUCGA---GC-CGCCUGC- -5' |
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7678 | 5' | -57.5 | NC_001973.1 | + | 26848 | 0.67 | 0.819137 |
Target: 5'- cAUGUCCAAACgccagUCGAuCUCGaccGCGGGCGc -3' miRNA: 3'- -UACGGGUUUG-----AGCUcGAGC---CGCCUGC- -5' |
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7678 | 5' | -57.5 | NC_001973.1 | + | 132539 | 0.68 | 0.736595 |
Target: 5'- -cGCCgggcgcggcggCGGGCUCGAGCgCGGCGGugugGCGc -3' miRNA: 3'- uaCGG-----------GUUUGAGCUCGaGCCGCC----UGC- -5' |
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7678 | 5' | -57.5 | NC_001973.1 | + | 71773 | 0.68 | 0.746242 |
Target: 5'- -cGCcgCCGAGCUCGAgGC-CGGCGG-CGc -3' miRNA: 3'- uaCG--GGUUUGAGCU-CGaGCCGCCuGC- -5' |
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7678 | 5' | -57.5 | NC_001973.1 | + | 158854 | 0.68 | 0.755792 |
Target: 5'- -cGCCCAAAC-CGAGCUC-GCGaGCc -3' miRNA: 3'- uaCGGGUUUGaGCUCGAGcCGCcUGc -5' |
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7678 | 5' | -57.5 | NC_001973.1 | + | 32533 | 0.68 | 0.765233 |
Target: 5'- -aGUCCAAGuucgCGAGCUCGGCGaucgccgccgccGACGc -3' miRNA: 3'- uaCGGGUUUga--GCUCGAGCCGC------------CUGC- -5' |
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7678 | 5' | -57.5 | NC_001973.1 | + | 100184 | 0.68 | 0.765233 |
Target: 5'- -cGCCCAAAUcgagggCGAGCaacUCGGCuuugucGGGCGg -3' miRNA: 3'- uaCGGGUUUGa-----GCUCG---AGCCG------CCUGC- -5' |
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7678 | 5' | -57.5 | NC_001973.1 | + | 56403 | 0.68 | 0.774559 |
Target: 5'- -gGCUCgAAGC-CGAGCUCGGUaucGGGCu -3' miRNA: 3'- uaCGGG-UUUGaGCUCGAGCCG---CCUGc -5' |
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7678 | 5' | -57.5 | NC_001973.1 | + | 29951 | 0.69 | 0.687197 |
Target: 5'- -cGCCuCGAGCcCGuacagagacgccGGCUCGGUGGugGg -3' miRNA: 3'- uaCGG-GUUUGaGC------------UCGAGCCGCCugC- -5' |
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7678 | 5' | -57.5 | NC_001973.1 | + | 95748 | 0.69 | 0.687197 |
Target: 5'- -cGCCCGccGACaagaUCGuGCUCGGCGuGGCc -3' miRNA: 3'- uaCGGGU--UUG----AGCuCGAGCCGC-CUGc -5' |
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7678 | 5' | -57.5 | NC_001973.1 | + | 41110 | 0.69 | 0.701189 |
Target: 5'- -cG-CCGAGCUCGAGUuuggucauuuaguugUCGGCGGcgGCGg -3' miRNA: 3'- uaCgGGUUUGAGCUCG---------------AGCCGCC--UGC- -5' |
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7678 | 5' | -57.5 | NC_001973.1 | + | 52721 | 0.69 | 0.707152 |
Target: 5'- -cGCCgcAGCUCGAGCgccaGGCGGcGCGu -3' miRNA: 3'- uaCGGguUUGAGCUCGag--CCGCC-UGC- -5' |
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7678 | 5' | -57.5 | NC_001973.1 | + | 56361 | 0.69 | 0.707152 |
Target: 5'- -gGCCCcGACUCGGcgccgcGCUCGGCGccaGGCu -3' miRNA: 3'- uaCGGGuUUGAGCU------CGAGCCGC---CUGc -5' |
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7678 | 5' | -57.5 | NC_001973.1 | + | 120371 | 0.69 | 0.707152 |
Target: 5'- -gGCCaAGACggCGAGUUUGGCgGGGCGa -3' miRNA: 3'- uaCGGgUUUGa-GCUCGAGCCG-CCUGC- -5' |
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7678 | 5' | -57.5 | NC_001973.1 | + | 121301 | 0.69 | 0.707152 |
Target: 5'- -cGCCCGcGGCgCGcGC-CGGCGGACGc -3' miRNA: 3'- uaCGGGU-UUGaGCuCGaGCCGCCUGC- -5' |
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7678 | 5' | -57.5 | NC_001973.1 | + | 123856 | 0.69 | 0.707152 |
Target: 5'- cGUGCCCAccgaCGAGCaCGGCagGGACGa -3' miRNA: 3'- -UACGGGUuugaGCUCGaGCCG--CCUGC- -5' |
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7678 | 5' | -57.5 | NC_001973.1 | + | 46712 | 0.69 | 0.717041 |
Target: 5'- cAUGUCCAAAUgguaCGAGCgCaGCGGAUGg -3' miRNA: 3'- -UACGGGUUUGa---GCUCGaGcCGCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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