miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7678 5' -57.5 NC_001973.1 + 56281 0.67 0.810523
Target:  5'- -cGCCCucggauacuAACcCGAGCUCGGCgccGGAUu -3'
miRNA:   3'- uaCGGGu--------UUGaGCUCGAGCCG---CCUGc -5'
7678 5' -57.5 NC_001973.1 + 106668 0.67 0.809653
Target:  5'- -cGCUCGAcgcGCUCGAcgaucucgacgucGCuUUGGCGGGCGc -3'
miRNA:   3'- uaCGGGUU---UGAGCU-------------CG-AGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 63065 0.67 0.80175
Target:  5'- -cGCCaCAAaguGCUCGAGCaCGGUGaGGCu -3'
miRNA:   3'- uaCGG-GUU---UGAGCUCGaGCCGC-CUGc -5'
7678 5' -57.5 NC_001973.1 + 56552 0.67 0.792826
Target:  5'- -gGCgCCGAGCUCGAuaUCGGgcucuaugaCGGGCGc -3'
miRNA:   3'- uaCG-GGUUUGAGCUcgAGCC---------GCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 144717 0.67 0.783759
Target:  5'- -cGUCCGagGACaUCGAGCgccaggCGGCGG-CGg -3'
miRNA:   3'- uaCGGGU--UUG-AGCUCGa-----GCCGCCuGC- -5'
7678 5' -57.5 NC_001973.1 + 56403 0.68 0.774559
Target:  5'- -gGCUCgAAGC-CGAGCUCGGUaucGGGCu -3'
miRNA:   3'- uaCGGG-UUUGaGCUCGAGCCG---CCUGc -5'
7678 5' -57.5 NC_001973.1 + 100184 0.68 0.765233
Target:  5'- -cGCCCAAAUcgagggCGAGCaacUCGGCuuugucGGGCGg -3'
miRNA:   3'- uaCGGGUUUGa-----GCUCG---AGCCG------CCUGC- -5'
7678 5' -57.5 NC_001973.1 + 32533 0.68 0.765233
Target:  5'- -aGUCCAAGuucgCGAGCUCGGCGaucgccgccgccGACGc -3'
miRNA:   3'- uaCGGGUUUga--GCUCGAGCCGC------------CUGC- -5'
7678 5' -57.5 NC_001973.1 + 158854 0.68 0.755792
Target:  5'- -cGCCCAAAC-CGAGCUC-GCGaGCc -3'
miRNA:   3'- uaCGGGUUUGaGCUCGAGcCGCcUGc -5'
7678 5' -57.5 NC_001973.1 + 71773 0.68 0.746242
Target:  5'- -cGCcgCCGAGCUCGAgGC-CGGCGG-CGc -3'
miRNA:   3'- uaCG--GGUUUGAGCU-CGaGCCGCCuGC- -5'
7678 5' -57.5 NC_001973.1 + 132539 0.68 0.736595
Target:  5'- -cGCCgggcgcggcggCGGGCUCGAGCgCGGCGGugugGCGc -3'
miRNA:   3'- uaCGG-----------GUUUGAGCUCGaGCCGCC----UGC- -5'
7678 5' -57.5 NC_001973.1 + 46712 0.69 0.717041
Target:  5'- cAUGUCCAAAUgguaCGAGCgCaGCGGAUGg -3'
miRNA:   3'- -UACGGGUUUGa---GCUCGaGcCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 52721 0.69 0.707152
Target:  5'- -cGCCgcAGCUCGAGCgccaGGCGGcGCGu -3'
miRNA:   3'- uaCGGguUUGAGCUCGag--CCGCC-UGC- -5'
7678 5' -57.5 NC_001973.1 + 56361 0.69 0.707152
Target:  5'- -gGCCCcGACUCGGcgccgcGCUCGGCGccaGGCu -3'
miRNA:   3'- uaCGGGuUUGAGCU------CGAGCCGC---CUGc -5'
7678 5' -57.5 NC_001973.1 + 120371 0.69 0.707152
Target:  5'- -gGCCaAGACggCGAGUUUGGCgGGGCGa -3'
miRNA:   3'- uaCGGgUUUGa-GCUCGAGCCG-CCUGC- -5'
7678 5' -57.5 NC_001973.1 + 121301 0.69 0.707152
Target:  5'- -cGCCCGcGGCgCGcGC-CGGCGGACGc -3'
miRNA:   3'- uaCGGGU-UUGaGCuCGaGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 123856 0.69 0.707152
Target:  5'- cGUGCCCAccgaCGAGCaCGGCagGGACGa -3'
miRNA:   3'- -UACGGGUuugaGCUCGaGCCG--CCUGC- -5'
7678 5' -57.5 NC_001973.1 + 41110 0.69 0.701189
Target:  5'- -cG-CCGAGCUCGAGUuuggucauuuaguugUCGGCGGcgGCGg -3'
miRNA:   3'- uaCgGGUUUGAGCUCG---------------AGCCGCC--UGC- -5'
7678 5' -57.5 NC_001973.1 + 95748 0.69 0.687197
Target:  5'- -cGCCCGccGACaagaUCGuGCUCGGCGuGGCc -3'
miRNA:   3'- uaCGGGU--UUG----AGCuCGAGCCGC-CUGc -5'
7678 5' -57.5 NC_001973.1 + 29951 0.69 0.687197
Target:  5'- -cGCCuCGAGCcCGuacagagacgccGGCUCGGUGGugGg -3'
miRNA:   3'- uaCGG-GUUUGaGC------------UCGAGCCGCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.