miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7679 3' -53.8 NC_001973.1 + 59885 0.66 0.962052
Target:  5'- gGCcCcAACggCGGcGCggugUCGGCCAACGCGa -3'
miRNA:   3'- -CGaGuUUGa-GCU-CG----AGCCGGUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 65642 0.66 0.960643
Target:  5'- cGCUCGAgcaggGCUacuuuaugugcgaGAGCgUGGCCAagcACGCGg -3'
miRNA:   3'- -CGAGUU-----UGAg------------CUCGaGCCGGU---UGCGC- -5'
7679 3' -53.8 NC_001973.1 + 367 0.66 0.958462
Target:  5'- cGCUCAcguaccgcAGCUCGAccgcgucgauguGCUUGGUCAAgaaaaacuCGCGa -3'
miRNA:   3'- -CGAGU--------UUGAGCU------------CGAGCCGGUU--------GCGC- -5'
7679 3' -53.8 NC_001973.1 + 56554 0.66 0.958462
Target:  5'- cGC-CGAGCUCGAuaUCGgGCUcuaugacgGGCGCGg -3'
miRNA:   3'- -CGaGUUUGAGCUcgAGC-CGG--------UUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 47784 0.66 0.958462
Target:  5'- cCUCAGguccaggccgGC-CGcGC-CGGCCGACGCGu -3'
miRNA:   3'- cGAGUU----------UGaGCuCGaGCCGGUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 83852 0.67 0.954646
Target:  5'- aGCggCAcGCgagCGAGCUCGcCCGcGCGCGg -3'
miRNA:   3'- -CGa-GUuUGa--GCUCGAGCcGGU-UGCGC- -5'
7679 3' -53.8 NC_001973.1 + 3191 0.67 0.954646
Target:  5'- cGCUCcgcGCUCGccAGCUCGGgCUGAuCGCu -3'
miRNA:   3'- -CGAGuu-UGAGC--UCGAGCC-GGUU-GCGc -5'
7679 3' -53.8 NC_001973.1 + 71776 0.67 0.954646
Target:  5'- cGC-CGAGCUCGAgGC-CGG-CGGCGCc -3'
miRNA:   3'- -CGaGUUUGAGCU-CGaGCCgGUUGCGc -5'
7679 3' -53.8 NC_001973.1 + 114690 0.67 0.950599
Target:  5'- cGC-CGAGCUCGAGUUUGG---GCGUGa -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCgguUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 115000 0.67 0.950599
Target:  5'- cGC-CGAGCUCGAGUUUGGgCAugAUGUc -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCgGU--UGCGc -5'
7679 3' -53.8 NC_001973.1 + 80183 0.67 0.950599
Target:  5'- uGCUCGg---CGAGCa-GGCCgAGCGCGc -3'
miRNA:   3'- -CGAGUuugaGCUCGagCCGG-UUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 83671 0.67 0.950599
Target:  5'- cGCUCGcuucGACgaCGAGCUCGcGCagaguCGCGa -3'
miRNA:   3'- -CGAGU----UUGa-GCUCGAGC-CGguu--GCGC- -5'
7679 3' -53.8 NC_001973.1 + 2866 0.67 0.946317
Target:  5'- -aUCAuGCuUUGAucacGCUCGGCgGACGCGc -3'
miRNA:   3'- cgAGUuUG-AGCU----CGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 138344 0.67 0.946317
Target:  5'- uGCUCcauuuGCUUGAGg-CGGCCgAGCGUGc -3'
miRNA:   3'- -CGAGuu---UGAGCUCgaGCCGG-UUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 37949 0.67 0.941799
Target:  5'- uGUUCGAGCcggucaUGAGUUUGGCCuucguGCGCa -3'
miRNA:   3'- -CGAGUUUGa-----GCUCGAGCCGGu----UGCGc -5'
7679 3' -53.8 NC_001973.1 + 70432 0.67 0.941799
Target:  5'- gGC-CGAACUCGAccgcccGCUCGgaGCUcACGCGa -3'
miRNA:   3'- -CGaGUUUGAGCU------CGAGC--CGGuUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 56355 0.67 0.941799
Target:  5'- cGCUCGGGCccCGA-CUCGGCgCcGCGCu -3'
miRNA:   3'- -CGAGUUUGa-GCUcGAGCCG-GuUGCGc -5'
7679 3' -53.8 NC_001973.1 + 84037 0.67 0.937041
Target:  5'- cGCgauuugCAAGCgaaagcCGAgGCgcaGGCCGACGCGa -3'
miRNA:   3'- -CGa-----GUUUGa-----GCU-CGag-CCGGUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 28195 0.67 0.937041
Target:  5'- -aUCAGACUgGAGCaaaacgagUCGGCCAccccggaGCGg -3'
miRNA:   3'- cgAGUUUGAgCUCG--------AGCCGGUug-----CGC- -5'
7679 3' -53.8 NC_001973.1 + 21472 0.67 0.937041
Target:  5'- -gUCAGGCUCac-CUCGGUgAGCGCGu -3'
miRNA:   3'- cgAGUUUGAGcucGAGCCGgUUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.