Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7679 | 5' | -54.4 | NC_001973.1 | + | 129650 | 0.66 | 0.958877 |
Target: 5'- -uCGCaUCGGCCGGuGGUCGugucgAAAGc -3' miRNA: 3'- auGCGcAGCCGGUC-CCAGCua---UUUCc -5' |
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7679 | 5' | -54.4 | NC_001973.1 | + | 70360 | 0.66 | 0.958877 |
Target: 5'- cGgGCGagCGGCCGcuGGGUCGGUAc--- -3' miRNA: 3'- aUgCGCa-GCCGGU--CCCAGCUAUuucc -5' |
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7679 | 5' | -54.4 | NC_001973.1 | + | 160724 | 0.66 | 0.955106 |
Target: 5'- uUACGCGcCGGCaAGGGUCaauc-GGGu -3' miRNA: 3'- -AUGCGCaGCCGgUCCCAGcuauuUCC- -5' |
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7679 | 5' | -54.4 | NC_001973.1 | + | 56377 | 0.67 | 0.942411 |
Target: 5'- cGCGC-UCGgcGCCAGGcUCGGUAucGGg -3' miRNA: 3'- aUGCGcAGC--CGGUCCcAGCUAUuuCC- -5' |
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7679 | 5' | -54.4 | NC_001973.1 | + | 87422 | 0.67 | 0.942411 |
Target: 5'- gACGaUGUCGGCC-GcGUCGAUAGccauGGGg -3' miRNA: 3'- aUGC-GCAGCCGGuCcCAGCUAUU----UCC- -5' |
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7679 | 5' | -54.4 | NC_001973.1 | + | 19713 | 0.67 | 0.942411 |
Target: 5'- cUACGCGUCGGCCGGaGcUC--UAGAGu -3' miRNA: 3'- -AUGCGCAGCCGGUC-CcAGcuAUUUCc -5' |
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7679 | 5' | -54.4 | NC_001973.1 | + | 1827 | 0.67 | 0.937709 |
Target: 5'- aGCGCGcacaCGGCCAGgcuguggcacaGGUUGGgguUGGAGGg -3' miRNA: 3'- aUGCGCa---GCCGGUC-----------CCAGCU---AUUUCC- -5' |
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7679 | 5' | -54.4 | NC_001973.1 | + | 39430 | 0.68 | 0.904471 |
Target: 5'- gGCGCGUCGcGuCCAGGG-CGAc----- -3' miRNA: 3'- aUGCGCAGC-C-GGUCCCaGCUauuucc -5' |
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7679 | 5' | -54.4 | NC_001973.1 | + | 41425 | 0.68 | 0.884662 |
Target: 5'- -cCGCGUCGGCCgacAGGcucCGGUGAAGc -3' miRNA: 3'- auGCGCAGCCGG---UCCca-GCUAUUUCc -5' |
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7679 | 5' | -54.4 | NC_001973.1 | + | 73662 | 0.69 | 0.862837 |
Target: 5'- gAgGCGcCGGCCcucgaacGGGUCGAacaGAAGGg -3' miRNA: 3'- aUgCGCaGCCGGu------CCCAGCUa--UUUCC- -5' |
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7679 | 5' | -54.4 | NC_001973.1 | + | 29052 | 0.7 | 0.839133 |
Target: 5'- aGCGUgcacagauaGUCGGCCAGGGUgGAg----- -3' miRNA: 3'- aUGCG---------CAGCCGGUCCCAgCUauuucc -5' |
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7679 | 5' | -54.4 | NC_001973.1 | + | 131770 | 0.71 | 0.78684 |
Target: 5'- cACGCGguugacgacggCGGCC-GGcUCGGUGAAGGg -3' miRNA: 3'- aUGCGCa----------GCCGGuCCcAGCUAUUUCC- -5' |
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7679 | 5' | -54.4 | NC_001973.1 | + | 72233 | 0.73 | 0.648725 |
Target: 5'- uUACGUGcCGGCCGGGGUCaAUcGAGu -3' miRNA: 3'- -AUGCGCaGCCGGUCCCAGcUAuUUCc -5' |
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7679 | 5' | -54.4 | NC_001973.1 | + | 16463 | 0.73 | 0.648725 |
Target: 5'- uUACGUGcCGGCCGGGGUCaAUcGAGu -3' miRNA: 3'- -AUGCGCaGCCGGUCCCAGcUAuUUCc -5' |
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7679 | 5' | -54.4 | NC_001973.1 | + | 129251 | 0.73 | 0.638474 |
Target: 5'- uUACGCGUCGGCaAGGGUCauc--GGGu -3' miRNA: 3'- -AUGCGCAGCCGgUCCCAGcuauuUCC- -5' |
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7679 | 5' | -54.4 | NC_001973.1 | + | 131550 | 0.73 | 0.638474 |
Target: 5'- aACGCGUCGGCgAaccGGGacUCGAUGuAAGGc -3' miRNA: 3'- aUGCGCAGCCGgU---CCC--AGCUAU-UUCC- -5' |
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7679 | 5' | -54.4 | NC_001973.1 | + | 12372 | 0.74 | 0.617963 |
Target: 5'- uUACGCGUCGGCaAGGGUCaAUcGAGu -3' miRNA: 3'- -AUGCGCAGCCGgUCCCAGcUAuUUCc -5' |
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7679 | 5' | -54.4 | NC_001973.1 | + | 12137 | 0.74 | 0.607721 |
Target: 5'- uUACGCGUCuGCCGGGGUCaAUcGAGu -3' miRNA: 3'- -AUGCGCAGcCGGUCCCAGcUAuUUCc -5' |
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7679 | 5' | -54.4 | NC_001973.1 | + | 12293 | 0.75 | 0.577131 |
Target: 5'- uUACGUGcCGGCCAGGGUCaAUcGAGu -3' miRNA: 3'- -AUGCGCaGCCGGUCCCAGcUAuUUCc -5' |
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7679 | 5' | -54.4 | NC_001973.1 | + | 72146 | 0.75 | 0.546895 |
Target: 5'- uUACGCGUCGGCaaaGGUCGAUcGAGu -3' miRNA: 3'- -AUGCGCAGCCGgucCCAGCUAuUUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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