miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7680 3' -57.1 NC_001973.1 + 44835 0.66 0.916192
Target:  5'- --cGCGgaAcucGUgCGACaGCGCGUCCg -3'
miRNA:   3'- ggaCGCgaUa--CAgGCUGcCGCGCAGG- -5'
7680 3' -57.1 NC_001973.1 + 106922 0.66 0.910455
Target:  5'- gCgUGCGCUucGUGUCCGugcccGCGuugaauuucaGCGCG-CCg -3'
miRNA:   3'- -GgACGCGA--UACAGGC-----UGC----------CGCGCaGG- -5'
7680 3' -57.1 NC_001973.1 + 128182 0.66 0.906905
Target:  5'- uCCUGCGCgAUGUCCGccAUccuguuugcuaguugGGC-CGUCUc -3'
miRNA:   3'- -GGACGCGaUACAGGC--UG---------------CCGcGCAGG- -5'
7680 3' -57.1 NC_001973.1 + 55652 0.66 0.904494
Target:  5'- --aGCGCgucggAUGggagccgaggCCGGCGGUgaaucGCGUCCc -3'
miRNA:   3'- ggaCGCGa----UACa---------GGCUGCCG-----CGCAGG- -5'
7680 3' -57.1 NC_001973.1 + 77270 0.66 0.89894
Target:  5'- cCCUGCGCgacGacgacgacgccgccUCCGccgccgccgagacggGCGGCGCGgcUCCg -3'
miRNA:   3'- -GGACGCGauaC--------------AGGC---------------UGCCGCGC--AGG- -5'
7680 3' -57.1 NC_001973.1 + 8593 0.66 0.898312
Target:  5'- gCC-GCGCgagaaagCCGGCGGCcGCG-CCg -3'
miRNA:   3'- -GGaCGCGauaca--GGCUGCCG-CGCaGG- -5'
7680 3' -57.1 NC_001973.1 + 9633 0.66 0.898312
Target:  5'- gCCgcugGCGUUcgGcUCGAgGGCGCGguacagCCg -3'
miRNA:   3'- -GGa---CGCGAuaCaGGCUgCCGCGCa-----GG- -5'
7680 3' -57.1 NC_001973.1 + 115097 0.66 0.898312
Target:  5'- gCCgagGCGCgAUGUCUGAgcCGG-GCGgaUCCg -3'
miRNA:   3'- -GGa--CGCGaUACAGGCU--GCCgCGC--AGG- -5'
7680 3' -57.1 NC_001973.1 + 68512 0.66 0.898312
Target:  5'- -aUGCGUUcgGUCCGAucgaagcaccuCGGCGaaaUCCu -3'
miRNA:   3'- ggACGCGAuaCAGGCU-----------GCCGCgc-AGG- -5'
7680 3' -57.1 NC_001973.1 + 92588 0.66 0.897049
Target:  5'- --gGaCGCUucauuuucuucuUGUCCGuCGGCGCG-CCa -3'
miRNA:   3'- ggaC-GCGAu-----------ACAGGCuGCCGCGCaGG- -5'
7680 3' -57.1 NC_001973.1 + 90106 0.66 0.897049
Target:  5'- gCCgGCGCcgaaaagcuUgCGAUGGCGCGUUCa -3'
miRNA:   3'- -GGaCGCGauac-----AgGCUGCCGCGCAGG- -5'
7680 3' -57.1 NC_001973.1 + 82467 0.66 0.891259
Target:  5'- -aUGCGCgccGUGUCCGcCGGCccgauggagacgcGCG-CCu -3'
miRNA:   3'- ggACGCGa--UACAGGCuGCCG-------------CGCaGG- -5'
7680 3' -57.1 NC_001973.1 + 62958 0.66 0.885293
Target:  5'- aCUUGCGCgagcccgCCGGCGaucaGCGCGUUUa -3'
miRNA:   3'- -GGACGCGauaca--GGCUGC----CGCGCAGG- -5'
7680 3' -57.1 NC_001973.1 + 23275 0.66 0.883267
Target:  5'- --cGCGCU-UGcCCGGCGGCgGCGguaaaaugaaagacUCCg -3'
miRNA:   3'- ggaCGCGAuACaGGCUGCCG-CGC--------------AGG- -5'
7680 3' -57.1 NC_001973.1 + 117501 0.67 0.878464
Target:  5'- -aUG-GCUuUGgccgCCGGCGGCGCGUa- -3'
miRNA:   3'- ggACgCGAuACa---GGCUGCCGCGCAgg -5'
7680 3' -57.1 NC_001973.1 + 4304 0.67 0.871427
Target:  5'- --cGCGCUGg--UCGAUGaGCGCGcCCa -3'
miRNA:   3'- ggaCGCGAUacaGGCUGC-CGCGCaGG- -5'
7680 3' -57.1 NC_001973.1 + 74332 0.67 0.869276
Target:  5'- gUCUGCGgucaaagaUAUGgCCGGCGGCGCagcggcgcaccgccGUCUg -3'
miRNA:   3'- -GGACGCg-------AUACaGGCUGCCGCG--------------CAGG- -5'
7680 3' -57.1 NC_001973.1 + 138982 0.67 0.864187
Target:  5'- --aGCuCUcgGUCCGcCGcCGCGUCCg -3'
miRNA:   3'- ggaCGcGAuaCAGGCuGCcGCGCAGG- -5'
7680 3' -57.1 NC_001973.1 + 31486 0.67 0.864187
Target:  5'- gUCUGCGCgcgAUaGUUgaacACGGCGCcGUCCg -3'
miRNA:   3'- -GGACGCGa--UA-CAGgc--UGCCGCG-CAGG- -5'
7680 3' -57.1 NC_001973.1 + 31357 0.67 0.856749
Target:  5'- cUCUGCGUg--GUCgccgCGGCGGUGUGcgCCa -3'
miRNA:   3'- -GGACGCGauaCAG----GCUGCCGCGCa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.