miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7680 3' -57.1 NC_001973.1 + 31357 0.67 0.856749
Target:  5'- cUCUGCGUg--GUCgccgCGGCGGUGUGcgCCa -3'
miRNA:   3'- -GGACGCGauaCAG----GCUGCCGCGCa-GG- -5'
7680 3' -57.1 NC_001973.1 + 58964 0.67 0.856749
Target:  5'- uCCUGCGC-GUGUaCUugGACGGCGCc--- -3'
miRNA:   3'- -GGACGCGaUACA-GG--CUGCCGCGcagg -5'
7680 3' -57.1 NC_001973.1 + 96752 0.67 0.849119
Target:  5'- aCCggaGCGCcggcgaGUCgGGCGGCGUGgcggCCa -3'
miRNA:   3'- -GGa--CGCGaua---CAGgCUGCCGCGCa---GG- -5'
7680 3' -57.1 NC_001973.1 + 1005 0.67 0.849119
Target:  5'- uCUUGuCGUUu--UCgGGCGGCGCGUCg -3'
miRNA:   3'- -GGAC-GCGAuacAGgCUGCCGCGCAGg -5'
7680 3' -57.1 NC_001973.1 + 105406 0.68 0.825136
Target:  5'- --aGCGCUuguaguUGUUgGGCGaGCGCGcCCa -3'
miRNA:   3'- ggaCGCGAu-----ACAGgCUGC-CGCGCaGG- -5'
7680 3' -57.1 NC_001973.1 + 74573 0.68 0.825136
Target:  5'- -aUGCGCgg----CGGCGGCGuCGUCCu -3'
miRNA:   3'- ggACGCGauacagGCUGCCGC-GCAGG- -5'
7680 3' -57.1 NC_001973.1 + 95711 0.68 0.825136
Target:  5'- gCCgacgGCGCgGUGcgCCGGCuguuggcgcagGGCGCGcCCg -3'
miRNA:   3'- -GGa---CGCGaUACa-GGCUG-----------CCGCGCaGG- -5'
7680 3' -57.1 NC_001973.1 + 120305 0.68 0.816799
Target:  5'- uCCaagGCGaaugGUGUCgugcggagaCGACGGCGCGgCCg -3'
miRNA:   3'- -GGa--CGCga--UACAG---------GCUGCCGCGCaGG- -5'
7680 3' -57.1 NC_001973.1 + 32046 0.68 0.816799
Target:  5'- -aUGCGCaucgcguUG-CCGGCGGUGCGcugCCa -3'
miRNA:   3'- ggACGCGau-----ACaGGCUGCCGCGCa--GG- -5'
7680 3' -57.1 NC_001973.1 + 6427 0.68 0.816799
Target:  5'- --gGCGCg----CCGACGaGCGCGcCCg -3'
miRNA:   3'- ggaCGCGauacaGGCUGC-CGCGCaGG- -5'
7680 3' -57.1 NC_001973.1 + 25717 0.68 0.811721
Target:  5'- cCUUGCGCgccgcccgcgCCGcCGGCGCGgCCu -3'
miRNA:   3'- -GGACGCGauaca-----GGCuGCCGCGCaGG- -5'
7680 3' -57.1 NC_001973.1 + 45834 0.69 0.790869
Target:  5'- gCCgGCGCggcGUUCGugGGCcuggGCGUCg -3'
miRNA:   3'- -GGaCGCGauaCAGGCugCCG----CGCAGg -5'
7680 3' -57.1 NC_001973.1 + 96577 0.69 0.772892
Target:  5'- aUCUGCGCgGUGg-CGGCGGCGCu--- -3'
miRNA:   3'- -GGACGCGaUACagGCUGCCGCGcagg -5'
7680 3' -57.1 NC_001973.1 + 19830 0.69 0.763721
Target:  5'- aCCUgGCGCUggGUGagCGAgCGGUcuaugGCGUCCa -3'
miRNA:   3'- -GGA-CGCGA--UACagGCU-GCCG-----CGCAGG- -5'
7680 3' -57.1 NC_001973.1 + 121303 0.69 0.754439
Target:  5'- cCCgcgGCGCgcg--CCGGCGGaCGCG-CCg -3'
miRNA:   3'- -GGa--CGCGauacaGGCUGCC-GCGCaGG- -5'
7680 3' -57.1 NC_001973.1 + 1884 0.69 0.745055
Target:  5'- uCCUGCGCUAUGUCgGccauuCGGUuuG-CCa -3'
miRNA:   3'- -GGACGCGAUACAGgCu----GCCGcgCaGG- -5'
7680 3' -57.1 NC_001973.1 + 39377 0.69 0.742221
Target:  5'- --gGCGCg--GUCCGAggucaccugcucgaCGGCGCGcgCCa -3'
miRNA:   3'- ggaCGCGauaCAGGCU--------------GCCGCGCa-GG- -5'
7680 3' -57.1 NC_001973.1 + 11020 0.7 0.735577
Target:  5'- aCCUgGCGCUGcGUCagCGAgCGGUcgaugGCGUCCa -3'
miRNA:   3'- -GGA-CGCGAUaCAG--GCU-GCCG-----CGCAGG- -5'
7680 3' -57.1 NC_001973.1 + 118450 0.7 0.735577
Target:  5'- --aGCGCgacaaAUGgcgcccgCCGucguCGGCGCGUCCc -3'
miRNA:   3'- ggaCGCGa----UACa------GGCu---GCCGCGCAGG- -5'
7680 3' -57.1 NC_001973.1 + 144452 0.7 0.729849
Target:  5'- --cGCGCgcGUGUCgGGCGGCGUGcgggacaagcgguucUCCa -3'
miRNA:   3'- ggaCGCGa-UACAGgCUGCCGCGC---------------AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.