miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7680 5' -50.9 NC_001973.1 + 9674 0.66 0.995
Target:  5'- -aGUugUUGCCCUCggcgaaCGGCGgcGCGu -3'
miRNA:   3'- gaCAugAGCGGGAGa-----GCUGUauUGCu -5'
7680 5' -50.9 NC_001973.1 + 92458 0.66 0.99329
Target:  5'- uUGgACUCGUCCUCguccgCGgACAUGGgGAa -3'
miRNA:   3'- gACaUGAGCGGGAGa----GC-UGUAUUgCU- -5'
7680 5' -50.9 NC_001973.1 + 159711 0.68 0.983388
Target:  5'- cCUGUACUCGUUgUUCUCGACc-GugGAg -3'
miRNA:   3'- -GACAUGAGCGG-GAGAGCUGuaUugCU- -5'
7680 5' -50.9 NC_001973.1 + 138181 0.68 0.983388
Target:  5'- -cGUGUUCGUCCUCUC--CAUGGCGGa -3'
miRNA:   3'- gaCAUGAGCGGGAGAGcuGUAUUGCU- -5'
7680 5' -50.9 NC_001973.1 + 101996 0.68 0.979145
Target:  5'- gUGUGCUCGUugcgcgCCUCcgacUCGGCGUAcACGGa -3'
miRNA:   3'- gACAUGAGCG------GGAG----AGCUGUAU-UGCU- -5'
7680 5' -50.9 NC_001973.1 + 45947 0.68 0.976745
Target:  5'- gUGUACggCGCgCUCUUGACG--GCGGc -3'
miRNA:   3'- gACAUGa-GCGgGAGAGCUGUauUGCU- -5'
7680 5' -50.9 NC_001973.1 + 95671 0.69 0.957955
Target:  5'- gCUGUACgCGCCgUCguggCGGCccGACGAg -3'
miRNA:   3'- -GACAUGaGCGGgAGa---GCUGuaUUGCU- -5'
7680 5' -50.9 NC_001973.1 + 88133 0.73 0.841517
Target:  5'- uUGUACgccgCGCCCUCgUCGGCGgccGACGc -3'
miRNA:   3'- gACAUGa---GCGGGAG-AGCUGUa--UUGCu -5'
7680 5' -50.9 NC_001973.1 + 97719 0.75 0.739612
Target:  5'- -cGUACUCGCCCUCUuCGauccGCAUgaacgcuucGACGAa -3'
miRNA:   3'- gaCAUGAGCGGGAGA-GC----UGUA---------UUGCU- -5'
7680 5' -50.9 NC_001973.1 + 70863 0.77 0.636276
Target:  5'- -cGUGCUCGCCCgaCUCGACcaacAACGAc -3'
miRNA:   3'- gaCAUGAGCGGGa-GAGCUGua--UUGCU- -5'
7680 5' -50.9 NC_001973.1 + 20467 0.77 0.625772
Target:  5'- gCUGUACUCGCCCUCggCG-CAcAGCGu -3'
miRNA:   3'- -GACAUGAGCGGGAGa-GCuGUaUUGCu -5'
7680 5' -50.9 NC_001973.1 + 11595 0.77 0.625772
Target:  5'- gCUGUACUCGCCCUCggCG-CAaAGCGu -3'
miRNA:   3'- -GACAUGAGCGGGAGa-GCuGUaUUGCu -5'
7680 5' -50.9 NC_001973.1 + 128505 1.1 0.0088
Target:  5'- gCUGUACUCGCCCUCUCGACAUAACGAg -3'
miRNA:   3'- -GACAUGAGCGGGAGAGCUGUAUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.