miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7681 3' -51.1 NC_001973.1 + 68391 0.66 0.996968
Target:  5'- gUCGCCCaGGUACAGgUaGAucgUGCGcUCGGc -3'
miRNA:   3'- -GGCGGGcUUAUGUUgA-CU---ACGC-AGCC- -5'
7681 3' -51.1 NC_001973.1 + 7724 0.66 0.996918
Target:  5'- cCCGCCCGAcugACGcuggagcACcGGUGCGgcgCGa -3'
miRNA:   3'- -GGCGGGCUua-UGU-------UGaCUACGCa--GCc -5'
7681 3' -51.1 NC_001973.1 + 51588 0.66 0.99644
Target:  5'- gCGCCCGG--GCAuuAUUGAUcGCGaggagUCGGg -3'
miRNA:   3'- gGCGGGCUuaUGU--UGACUA-CGC-----AGCC- -5'
7681 3' -51.1 NC_001973.1 + 30804 0.66 0.99644
Target:  5'- gUCGCCCGAGggg--UUGGUgGCGUCGu -3'
miRNA:   3'- -GGCGGGCUUauguuGACUA-CGCAGCc -5'
7681 3' -51.1 NC_001973.1 + 13583 0.66 0.995155
Target:  5'- -gGCCCGAAUaaaACAAUUGuUGCG-CGc -3'
miRNA:   3'- ggCGGGCUUA---UGUUGACuACGCaGCc -5'
7681 3' -51.1 NC_001973.1 + 67749 0.66 0.995155
Target:  5'- gUCGCCgugcaGGAUgcgcaACGACuUGAUGCG-CGGg -3'
miRNA:   3'- -GGCGGg----CUUA-----UGUUG-ACUACGCaGCC- -5'
7681 3' -51.1 NC_001973.1 + 97793 0.66 0.995082
Target:  5'- aCgGCCuCGAGcGCGAgucuCUGAUGCGaacguguUCGGg -3'
miRNA:   3'- -GgCGG-GCUUaUGUU----GACUACGC-------AGCC- -5'
7681 3' -51.1 NC_001973.1 + 28286 0.66 0.994384
Target:  5'- gCGCCuCGug-GCGGCcGAgcgccGCGUCGGc -3'
miRNA:   3'- gGCGG-GCuuaUGUUGaCUa----CGCAGCC- -5'
7681 3' -51.1 NC_001973.1 + 159114 0.67 0.993516
Target:  5'- uUGCUCGGcccGCGACUGA-GCGagUCGGa -3'
miRNA:   3'- gGCGGGCUua-UGUUGACUaCGC--AGCC- -5'
7681 3' -51.1 NC_001973.1 + 62158 0.67 0.992442
Target:  5'- aCGCgCGAGUACgccuuccGugUGAUGCGgugCGa -3'
miRNA:   3'- gGCGgGCUUAUG-------UugACUACGCa--GCc -5'
7681 3' -51.1 NC_001973.1 + 14271 0.67 0.991461
Target:  5'- aCGCgCGAAUcgaacGCGAC-GGUGCG-CGGu -3'
miRNA:   3'- gGCGgGCUUA-----UGUUGaCUACGCaGCC- -5'
7681 3' -51.1 NC_001973.1 + 30367 0.67 0.990256
Target:  5'- gCCGCCgGcgcgGCGACUcgGGUGCGggcCGGc -3'
miRNA:   3'- -GGCGGgCuua-UGUUGA--CUACGCa--GCC- -5'
7681 3' -51.1 NC_001973.1 + 77982 0.67 0.990129
Target:  5'- cCUGCCCGAGUACAagauaccgaagcaGgUGAUGCuGcCGc -3'
miRNA:   3'- -GGCGGGCUUAUGU-------------UgACUACG-CaGCc -5'
7681 3' -51.1 NC_001973.1 + 56817 0.67 0.988922
Target:  5'- aCCGCaUCGGGcUGCuGCagGAUGaCGUCGGg -3'
miRNA:   3'- -GGCG-GGCUU-AUGuUGa-CUAC-GCAGCC- -5'
7681 3' -51.1 NC_001973.1 + 74765 0.67 0.988922
Target:  5'- gUCGCCgCGAAUGgaaAACuUGGUGCGgucgcCGGg -3'
miRNA:   3'- -GGCGG-GCUUAUg--UUG-ACUACGCa----GCC- -5'
7681 3' -51.1 NC_001973.1 + 81965 0.67 0.988922
Target:  5'- gCCGUCCGAGUGCGuuucGAUGuCGUagcaGGc -3'
miRNA:   3'- -GGCGGGCUUAUGUuga-CUAC-GCAg---CC- -5'
7681 3' -51.1 NC_001973.1 + 21345 0.67 0.988781
Target:  5'- gCCGCCCGAGUugccgguggucuuGCucaaugGAUG-GUCGGu -3'
miRNA:   3'- -GGCGGGCUUA-------------UGuuga--CUACgCAGCC- -5'
7681 3' -51.1 NC_001973.1 + 96881 0.68 0.98745
Target:  5'- -gGCCgCGGAUcugugcGCGGCgGgcGCGUCGGa -3'
miRNA:   3'- ggCGG-GCUUA------UGUUGaCuaCGCAGCC- -5'
7681 3' -51.1 NC_001973.1 + 43732 0.68 0.985831
Target:  5'- gCUGCUCGAugGCGACc---GCGUCGGu -3'
miRNA:   3'- -GGCGGGCUuaUGUUGacuaCGCAGCC- -5'
7681 3' -51.1 NC_001973.1 + 41781 0.68 0.985831
Target:  5'- gCUGCCCGAGaACGGCgGgcGCGagUGGg -3'
miRNA:   3'- -GGCGGGCUUaUGUUGaCuaCGCa-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.