Results 21 - 40 of 216 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7681 | 5' | -57.9 | NC_001973.1 | + | 48571 | 0.66 | 0.885381 |
Target: 5'- cGCgCCGACGACGacCAgaugcgguacgUGCUgcagacCGAGCCCa -3' miRNA: 3'- -CG-GGCUGCUGUa-GU-----------GCGGa-----GCUCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 37082 | 0.66 | 0.885381 |
Target: 5'- cGCCCGAuucCGAgGaC-CGCCgcCGAGCCg -3' miRNA: 3'- -CGGGCU---GCUgUaGuGCGGa-GCUCGGg -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 115359 | 0.66 | 0.885381 |
Target: 5'- cGCCCGAgGACAUCGaGCaCUacguggacgCGA-CCCg -3' miRNA: 3'- -CGGGCUgCUGUAGUgCG-GA---------GCUcGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 99657 | 0.66 | 0.885381 |
Target: 5'- -aCUGGCGAUugaugCGCGCCaUCGucucccGCCCg -3' miRNA: 3'- cgGGCUGCUGua---GUGCGG-AGCu-----CGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 62705 | 0.66 | 0.885381 |
Target: 5'- --gCGACGACGUCGCGaaaaaCUU--GCCCa -3' miRNA: 3'- cggGCUGCUGUAGUGCg----GAGcuCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 37290 | 0.66 | 0.885381 |
Target: 5'- aGCCCGGaGACGa---GCCcggagaCGAGCCCg -3' miRNA: 3'- -CGGGCUgCUGUagugCGGa-----GCUCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 33358 | 0.66 | 0.885381 |
Target: 5'- uGCCCGugccggccGCGAUccggAUCACG-UUCGAGgCCg -3' miRNA: 3'- -CGGGC--------UGCUG----UAGUGCgGAGCUCgGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 121840 | 0.66 | 0.871579 |
Target: 5'- gGCCCGAacCGGuuUCGgcCGCCgCGAcGCCCg -3' miRNA: 3'- -CGGGCU--GCUguAGU--GCGGaGCU-CGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 131186 | 0.66 | 0.878583 |
Target: 5'- uUUCGAgGGCGU-GCcCCUUGAGCCCu -3' miRNA: 3'- cGGGCUgCUGUAgUGcGGAGCUCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 154044 | 0.66 | 0.878583 |
Target: 5'- gGCCCGAUG-CAguuugaGUCUgucgaCGAGCCCg -3' miRNA: 3'- -CGGGCUGCuGUagug--CGGA-----GCUCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 24214 | 0.66 | 0.878583 |
Target: 5'- cCCCGAguaCGAguUCACGCCUCacaauuucCCCg -3' miRNA: 3'- cGGGCU---GCUguAGUGCGGAGcuc-----GGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 48393 | 0.66 | 0.878583 |
Target: 5'- cGCCCGACa--GUCgGCGCU--GAGCCUg -3' miRNA: 3'- -CGGGCUGcugUAG-UGCGGagCUCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 58728 | 0.66 | 0.885381 |
Target: 5'- cGgCCGACuuuguGCAgcggCGCGCCgUCGcGCCCc -3' miRNA: 3'- -CgGGCUGc----UGUa---GUGCGG-AGCuCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 157203 | 0.67 | 0.841601 |
Target: 5'- uGCCgGugGAUAUuucguagagcagCACGCCcaCG-GCCCa -3' miRNA: 3'- -CGGgCugCUGUA------------GUGCGGa-GCuCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 64182 | 0.67 | 0.848609 |
Target: 5'- uGCgCGACGACAUCaacuugguggaguGCGUCacCGcGCCCc -3' miRNA: 3'- -CGgGCUGCUGUAG-------------UGCGGa-GCuCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 25090 | 0.67 | 0.849379 |
Target: 5'- -aCCGACcgguGCAgCACGCUcaUCGAGaCCCa -3' miRNA: 3'- cgGGCUGc---UGUaGUGCGG--AGCUC-GGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 115780 | 0.67 | 0.849379 |
Target: 5'- cGCgCGGCcGACAUCAaagccaGCCUCGGcgagcacuuuGCCg -3' miRNA: 3'- -CGgGCUG-CUGUAGUg-----CGGAGCU----------CGGg -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 124309 | 0.67 | 0.849379 |
Target: 5'- -gUCGGCGGCA-CGCGCUcgagCGAGCUg -3' miRNA: 3'- cgGGCUGCUGUaGUGCGGa---GCUCGGg -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 130512 | 0.67 | 0.849379 |
Target: 5'- cGCgUCGGCGgauaACAUCGUGCCUaaacCGAGCUCg -3' miRNA: 3'- -CG-GGCUGC----UGUAGUGCGGA----GCUCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 147914 | 0.67 | 0.841601 |
Target: 5'- cGCCUcuuGACGGCGcUUGCGUUUCGAGuguuCCCu -3' miRNA: 3'- -CGGG---CUGCUGU-AGUGCGGAGCUC----GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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