miRNA display CGI


Results 81 - 100 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7681 5' -57.9 NC_001973.1 + 41783 0.68 0.758884
Target:  5'- uGCCCGAgaaCGGCGggcgcgagugggugcUCgACGUggacUUCGAGCCCg -3'
miRNA:   3'- -CGGGCU---GCUGU---------------AG-UGCG----GAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 36875 0.68 0.782544
Target:  5'- uGUUCGACGACGggCGCGCC--GAGUUCa -3'
miRNA:   3'- -CGGGCUGCUGUa-GUGCGGagCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 158766 0.68 0.782544
Target:  5'- cGCgCGcCGACcuaCACGCC-CGAcGCCCu -3'
miRNA:   3'- -CGgGCuGCUGua-GUGCGGaGCU-CGGG- -5'
7681 5' -57.9 NC_001973.1 + 67402 0.68 0.803627
Target:  5'- gGCCCGgcgguguacACGACGaugggguaggagacuUCGCGCaggUCGGGCaCCg -3'
miRNA:   3'- -CGGGC---------UGCUGU---------------AGUGCGg--AGCUCG-GG- -5'
7681 5' -57.9 NC_001973.1 + 158642 0.68 0.800168
Target:  5'- cGCCCGACGACccguUCGgCGagaUCGGGCa- -3'
miRNA:   3'- -CGGGCUGCUGu---AGU-GCgg-AGCUCGgg -5'
7681 5' -57.9 NC_001973.1 + 144023 0.68 0.800168
Target:  5'- gGCCCGcaGCGACcuucaaaucauGUC-CGCCaaCGAGCCg -3'
miRNA:   3'- -CGGGC--UGCUG-----------UAGuGCGGa-GCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 94972 0.68 0.800168
Target:  5'- uCCCGcCGACAagGUGCC-CGuGCCCa -3'
miRNA:   3'- cGGGCuGCUGUagUGCGGaGCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 32547 0.68 0.800168
Target:  5'- aGCUCGGCGAUcgC-CGCCgcCGAcGCCg -3'
miRNA:   3'- -CGGGCUGCUGuaGuGCGGa-GCU-CGGg -5'
7681 5' -57.9 NC_001973.1 + 17451 0.68 0.800168
Target:  5'- -gCCGaACGGCggCAUGCaCUCGAGCaugCCg -3'
miRNA:   3'- cgGGC-UGCUGuaGUGCG-GAGCUCG---GG- -5'
7681 5' -57.9 NC_001973.1 + 95041 0.68 0.800168
Target:  5'- ---gGACGGCAUCAacgacaGCCUCaAGUCCa -3'
miRNA:   3'- cgggCUGCUGUAGUg-----CGGAGcUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 62939 0.68 0.7993
Target:  5'- gGgCCGGCGuCGUCAguagacuUGCg-CGAGCCCg -3'
miRNA:   3'- -CgGGCUGCuGUAGU-------GCGgaGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 71742 0.68 0.791423
Target:  5'- cGCCCG-CGGCcgCcccgGCCgcgcCGGGCCCc -3'
miRNA:   3'- -CGGGCuGCUGuaGug--CGGa---GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 27936 0.68 0.791423
Target:  5'- aCCCGAC-ACcgCACGCa-CGuGCCCc -3'
miRNA:   3'- cGGGCUGcUGuaGUGCGgaGCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 99773 0.68 0.791423
Target:  5'- cGCUCGGCGAUGUUGCGC-UCGA-CUCg -3'
miRNA:   3'- -CGGGCUGCUGUAGUGCGgAGCUcGGG- -5'
7681 5' -57.9 NC_001973.1 + 18757 0.68 0.791423
Target:  5'- cGUUgGACGACAUCAacgGCUUUGuuaaauuGCCCa -3'
miRNA:   3'- -CGGgCUGCUGUAGUg--CGGAGCu------CGGG- -5'
7681 5' -57.9 NC_001973.1 + 126691 0.69 0.73641
Target:  5'- -gCCGuuuCGGCGUCGCGCC--GGGCCa -3'
miRNA:   3'- cgGGCu--GCUGUAGUGCGGagCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 56343 0.69 0.73641
Target:  5'- cGCUCG-CGGC--CGCG-CUCGGGCCCc -3'
miRNA:   3'- -CGGGCuGCUGuaGUGCgGAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 69425 0.69 0.744901
Target:  5'- aUCCGGCGuCGUugCGCGUCUCGuggucggucagcgGGCCCu -3'
miRNA:   3'- cGGGCUGCuGUA--GUGCGGAGC-------------UCGGG- -5'
7681 5' -57.9 NC_001973.1 + 137539 0.69 0.74584
Target:  5'- uGUUCGGCGACGgcccgucgUACGUCgucgCGAGCCg -3'
miRNA:   3'- -CGGGCUGCUGUa-------GUGCGGa---GCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 135883 0.69 0.726894
Target:  5'- uGCCCGAcCGACAgaGCGgCggucgCGGGCCg -3'
miRNA:   3'- -CGGGCU-GCUGUagUGCgGa----GCUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.