Results 41 - 60 of 216 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7681 | 5' | -57.9 | NC_001973.1 | + | 72081 | 0.77 | 0.330126 |
Target: 5'- aGCCCGAUGACAUCAUGCugccggUgacaucaucccuaacUCGAGCUCg -3' miRNA: 3'- -CGGGCUGCUGUAGUGCG------G---------------AGCUCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 159422 | 0.76 | 0.33963 |
Target: 5'- -aUCGACGuACGUCaaguugcaaaagaaACGCCUCGAGUCCg -3' miRNA: 3'- cgGGCUGC-UGUAG--------------UGCGGAGCUCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 160677 | 0.76 | 0.349332 |
Target: 5'- -gCCGAUGAgAUCAUGCCuuaacUCGAGCUCg -3' miRNA: 3'- cgGGCUGCUgUAGUGCGG-----AGCUCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 3581 | 0.75 | 0.372465 |
Target: 5'- -aCCGACGGCG-CGCGCUUCG-GCUCg -3' miRNA: 3'- cgGGCUGCUGUaGUGCGGAGCuCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 21138 | 0.75 | 0.388456 |
Target: 5'- -aCCGAUGAgAUCAUGCuucgCUCGAGCUCg -3' miRNA: 3'- cgGGCUGCUgUAGUGCG----GAGCUCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 119880 | 0.75 | 0.404891 |
Target: 5'- -gCCGGCGACuAUCAgCGCCccuUgGAGCCCg -3' miRNA: 3'- cgGGCUGCUG-UAGU-GCGG---AgCUCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 73825 | 0.75 | 0.404891 |
Target: 5'- cGCCCGACGAag--GCGaCCUCGAacgacaGCCCa -3' miRNA: 3'- -CGGGCUGCUguagUGC-GGAGCU------CGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 145026 | 0.75 | 0.380404 |
Target: 5'- cGCCCGaguGCGGCGcgaGCGCgUCGAGCgCCg -3' miRNA: 3'- -CGGGC---UGCUGUag-UGCGgAGCUCG-GG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 21214 | 0.75 | 0.380404 |
Target: 5'- aGCCCGAUGACAUCAUGCCgaacUCG-GUg- -3' miRNA: 3'- -CGGGCUGCUGUAGUGCGG----AGCuCGgg -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 52188 | 0.74 | 0.465702 |
Target: 5'- aGCgCGGCGGgGUCGCGCgaCUCGAGCa- -3' miRNA: 3'- -CGgGCUGCUgUAGUGCG--GAGCUCGgg -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 87456 | 0.74 | 0.421757 |
Target: 5'- gGCCCGACGGCGcgcagCAgGuCCUUGAGCUUc -3' miRNA: 3'- -CGGGCUGCUGUa----GUgC-GGAGCUCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 6416 | 0.74 | 0.421757 |
Target: 5'- uGCgCGGCGGCggCGCGCCgacgagCGcGCCCg -3' miRNA: 3'- -CGgGCUGCUGuaGUGCGGa-----GCuCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 96955 | 0.74 | 0.457614 |
Target: 5'- cGUUCGACGACuggCGCGCCgacacgcucuacccgCGAGCCg -3' miRNA: 3'- -CGGGCUGCUGua-GUGCGGa--------------GCUCGGg -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 100370 | 0.74 | 0.430348 |
Target: 5'- aCUCGACGACGuagccUCGCGCgUCGccGCCCa -3' miRNA: 3'- cGGGCUGCUGU-----AGUGCGgAGCu-CGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 39396 | 0.74 | 0.45672 |
Target: 5'- uGCUCGACGGCG-CGCGCCaggUCG-GCCg -3' miRNA: 3'- -CGGGCUGCUGUaGUGCGG---AGCuCGGg -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 47753 | 0.74 | 0.430348 |
Target: 5'- cGCCCGGCGGaAUCACGgccuCCUCGGcGCUCc -3' miRNA: 3'- -CGGGCUGCUgUAGUGC----GGAGCU-CGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 73373 | 0.74 | 0.430348 |
Target: 5'- uGCCCGGCGAUcgUACGgC-CGAGCgCg -3' miRNA: 3'- -CGGGCUGCUGuaGUGCgGaGCUCGgG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 77688 | 0.74 | 0.465702 |
Target: 5'- cGCCCGACGAgGUCAagaacaacaGCCUCuGGUCg -3' miRNA: 3'- -CGGGCUGCUgUAGUg--------CGGAGcUCGGg -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 12480 | 0.73 | 0.502505 |
Target: 5'- aGCCCGAUGAgAUCAUGCCcUCcGGCg- -3' miRNA: 3'- -CGGGCUGCUgUAGUGCGG-AGcUCGgg -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 53855 | 0.73 | 0.502505 |
Target: 5'- cCCCGGCGGCGgcgGCGCCgcCGAGCgCg -3' miRNA: 3'- cGGGCUGCUGUag-UGCGGa-GCUCGgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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