miRNA display CGI


Results 61 - 80 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7681 5' -57.9 NC_001973.1 + 16571 0.73 0.483936
Target:  5'- aGCCCGAUGAgAUCAUGCCgccgaUGAGaucauuCCCa -3'
miRNA:   3'- -CGGGCUGCUgUAGUGCGGa----GCUC------GGG- -5'
7681 5' -57.9 NC_001973.1 + 121301 0.73 0.496901
Target:  5'- cGCCCG-CGGCG-CGCGCCggcggacgcgccgaCGAGCUCa -3'
miRNA:   3'- -CGGGCuGCUGUaGUGCGGa-------------GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 158378 0.73 0.501569
Target:  5'- cGCCCGcgcCGACucguccgAUCGCGCC-CGcGCCCg -3'
miRNA:   3'- -CGGGCu--GCUG-------UAGUGCGGaGCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 97173 0.73 0.521379
Target:  5'- gGCaCCGACGAgaAUUGCGCCUC--GCCCu -3'
miRNA:   3'- -CG-GGCUGCUg-UAGUGCGGAGcuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 53855 0.73 0.502505
Target:  5'- cCCCGGCGGCGgcgGCGCCgcCGAGCgCg -3'
miRNA:   3'- cGGGCUGCUGUag-UGCGGa-GCUCGgG- -5'
7681 5' -57.9 NC_001973.1 + 12480 0.73 0.502505
Target:  5'- aGCCCGAUGAgAUCAUGCCcUCcGGCg- -3'
miRNA:   3'- -CGGGCUGCUgUAGUGCGG-AGcUCGgg -5'
7681 5' -57.9 NC_001973.1 + 155463 0.73 0.483936
Target:  5'- aGCCCGGUGAg--CcCGCuCUCGAGCCCg -3'
miRNA:   3'- -CGGGCUGCUguaGuGCG-GAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 9813 0.72 0.578476
Target:  5'- gGCCaCGACGGCGUCGuCGgagaaggcgcuuuCCUCGcgcGCCCa -3'
miRNA:   3'- -CGG-GCUGCUGUAGU-GC-------------GGAGCu--CGGG- -5'
7681 5' -57.9 NC_001973.1 + 119457 0.72 0.569656
Target:  5'- cGCCCGcCG-CcgC-CGCCgcCGAGCCCg -3'
miRNA:   3'- -CGGGCuGCuGuaGuGCGGa-GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 158687 0.72 0.569656
Target:  5'- -gCCGGCGGCcgagcgCGCGCCUacCGAcGCCCu -3'
miRNA:   3'- cgGGCUGCUGua----GUGCGGA--GCU-CGGG- -5'
7681 5' -57.9 NC_001973.1 + 155379 0.72 0.569656
Target:  5'- gGCCCGuuGAg--CcCGCuCUCGAGCCCg -3'
miRNA:   3'- -CGGGCugCUguaGuGCG-GAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 37254 0.72 0.569656
Target:  5'- aGCCCGGaGACGagccuCGCCaCGAGCCCc -3'
miRNA:   3'- -CGGGCUgCUGUagu--GCGGaGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 25996 0.72 0.569656
Target:  5'- -aCCGGCGACA-CGgGCCUCuuuauGAGCUCg -3'
miRNA:   3'- cgGGCUGCUGUaGUgCGGAG-----CUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 82485 0.72 0.566723
Target:  5'- gGCCCGAUggaGACG-CGCGCCUUGccggcgucgcggccGGCCUg -3'
miRNA:   3'- -CGGGCUG---CUGUaGUGCGGAGC--------------UCGGG- -5'
7681 5' -57.9 NC_001973.1 + 61128 0.72 0.550183
Target:  5'- --gCG-CGGCGUCGCuCCUCGAGCUCg -3'
miRNA:   3'- cggGCuGCUGUAGUGcGGAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 159199 0.72 0.549214
Target:  5'- cGCUCGACGAguUgCAaGCCagggcgaUCGAGCCCg -3'
miRNA:   3'- -CGGGCUGCUguA-GUgCGG-------AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 72849 0.72 0.540522
Target:  5'- aGUCCGAUGGacCGUCGcCGCCUCGcGCgCCu -3'
miRNA:   3'- -CGGGCUGCU--GUAGU-GCGGAGCuCG-GG- -5'
7681 5' -57.9 NC_001973.1 + 102239 0.72 0.540522
Target:  5'- uUCCGAuCGACugCGCGCCUCGcGGCUCa -3'
miRNA:   3'- cGGGCU-GCUGuaGUGCGGAGC-UCGGG- -5'
7681 5' -57.9 NC_001973.1 + 158198 0.72 0.559896
Target:  5'- -aCCGGCGGCAccuggUCGCGUCUCGAGaCg -3'
miRNA:   3'- cgGGCUGCUGU-----AGUGCGGAGCUCgGg -5'
7681 5' -57.9 NC_001973.1 + 83034 0.72 0.530919
Target:  5'- cGgCgGGCGAgGcggCGCGCCcgUCGAGCCCg -3'
miRNA:   3'- -CgGgCUGCUgUa--GUGCGG--AGCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.