miRNA display CGI


Results 81 - 100 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7681 5' -57.9 NC_001973.1 + 127336 0.72 0.579458
Target:  5'- --nCGAUGAgAUCACGCCUaaacUGAGCUCg -3'
miRNA:   3'- cggGCUGCUgUAGUGCGGA----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 72849 0.72 0.540522
Target:  5'- aGUCCGAUGGacCGUCGcCGCCUCGcGCgCCu -3'
miRNA:   3'- -CGGGCUGCU--GUAGU-GCGGAGCuCG-GG- -5'
7681 5' -57.9 NC_001973.1 + 88751 0.71 0.628869
Target:  5'- cGCCUcguaGGCGUCGCGCaggcaCUCGuGCCCg -3'
miRNA:   3'- -CGGGcug-CUGUAGUGCG-----GAGCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 118781 0.71 0.628869
Target:  5'- --aCGACGAgUAUCACGCUUCG-GCCg -3'
miRNA:   3'- cggGCUGCU-GUAGUGCGGAGCuCGGg -5'
7681 5' -57.9 NC_001973.1 + 129359 0.71 0.618955
Target:  5'- -gCCGAUGAgAUCACGCC-CaAGCUCg -3'
miRNA:   3'- cgGGCUGCUgUAGUGCGGaGcUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 26522 0.71 0.59916
Target:  5'- cGCUCGACGACGUaGCGCUcaaagUCG-GCCg -3'
miRNA:   3'- -CGGGCUGCUGUAgUGCGG-----AGCuCGGg -5'
7681 5' -57.9 NC_001973.1 + 96459 0.71 0.589294
Target:  5'- gGCCCgucGACGAgCAUCGCGCCgcUC-AGCCg -3'
miRNA:   3'- -CGGG---CUGCU-GUAGUGCGG--AGcUCGGg -5'
7681 5' -57.9 NC_001973.1 + 155912 0.71 0.59916
Target:  5'- uGCCCGGCGAUuacgaaCACaagGCCUCGucGUCCa -3'
miRNA:   3'- -CGGGCUGCUGua----GUG---CGGAGCu-CGGG- -5'
7681 5' -57.9 NC_001973.1 + 70089 0.7 0.658598
Target:  5'- gGCUCGAUGuugugcgcgaGCGcgaACGCCUCGGcGCCCg -3'
miRNA:   3'- -CGGGCUGC----------UGUag-UGCGGAGCU-CGGG- -5'
7681 5' -57.9 NC_001973.1 + 155421 0.7 0.638786
Target:  5'- aGCCCGuuGAg--CcCGCuCUCGGGCCCg -3'
miRNA:   3'- -CGGGCugCUguaGuGCG-GAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 109124 0.7 0.688146
Target:  5'- cGCCgCGGCGGCGgccucuugggCGcCGCCUCGAcgaGCCg -3'
miRNA:   3'- -CGG-GCUGCUGUa---------GU-GCGGAGCU---CGGg -5'
7681 5' -57.9 NC_001973.1 + 68793 0.7 0.65266
Target:  5'- aCUCGACGACAUgGCGCUgaaccgccaccgagaUCucGCCCa -3'
miRNA:   3'- cGGGCUGCUGUAgUGCGG---------------AGcuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 17262 0.7 0.648698
Target:  5'- gGCCgCGGCGGC--CGCGCaCUCGGGCa- -3'
miRNA:   3'- -CGG-GCUGCUGuaGUGCG-GAGCUCGgg -5'
7681 5' -57.9 NC_001973.1 + 94139 0.7 0.688146
Target:  5'- aGCUCGACgcgGACcUgGCGCCgucCGAGCCg -3'
miRNA:   3'- -CGGGCUG---CUGuAgUGCGGa--GCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 107061 0.7 0.67833
Target:  5'- cUuuGACGAaucgcgCGCGCaCUCGAGCCg -3'
miRNA:   3'- cGggCUGCUgua---GUGCG-GAGCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 6369 0.7 0.668477
Target:  5'- aGCCUuGCGAgucgAUCGCGCUUCGAGCa- -3'
miRNA:   3'- -CGGGcUGCUg---UAGUGCGGAGCUCGgg -5'
7681 5' -57.9 NC_001973.1 + 8193 0.7 0.648698
Target:  5'- cGCgCCGACGGCAccgcuUgGCGCCgcuGGGCCg -3'
miRNA:   3'- -CG-GGCUGCUGU-----AgUGCGGag-CUCGGg -5'
7681 5' -57.9 NC_001973.1 + 72450 0.7 0.638786
Target:  5'- --aUGAUGAUGUCAUGCCUaacCGAGCUCg -3'
miRNA:   3'- cggGCUGCUGUAGUGCGGA---GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 28142 0.7 0.638786
Target:  5'- cGCCUuuaaaguagGGCuugGACGUCGCGCCgcCGAcGCCCa -3'
miRNA:   3'- -CGGG---------CUG---CUGUAGUGCGGa-GCU-CGGG- -5'
7681 5' -57.9 NC_001973.1 + 56052 0.7 0.638786
Target:  5'- cGCuCCGugGACAgggaGCGCUcgGAGCCUg -3'
miRNA:   3'- -CG-GGCugCUGUag--UGCGGagCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.