miRNA display CGI


Results 101 - 120 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7681 5' -57.9 NC_001973.1 + 68793 0.7 0.65266
Target:  5'- aCUCGACGACAUgGCGCUgaaccgccaccgagaUCucGCCCa -3'
miRNA:   3'- cGGGCUGCUGUAgUGCGG---------------AGcuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 56052 0.7 0.638786
Target:  5'- cGCuCCGugGACAgggaGCGCUcgGAGCCUg -3'
miRNA:   3'- -CG-GGCugCUGUag--UGCGGagCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 28142 0.7 0.638786
Target:  5'- cGCCUuuaaaguagGGCuugGACGUCGCGCCgcCGAcGCCCa -3'
miRNA:   3'- -CGGG---------CUG---CUGUAGUGCGGa-GCU-CGGG- -5'
7681 5' -57.9 NC_001973.1 + 158301 0.69 0.701814
Target:  5'- -gCCGAuuuuccaaaaaaguuCGACGUcCGCGCC-CGAGCCg -3'
miRNA:   3'- cgGGCU---------------GCUGUA-GUGCGGaGCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 113703 0.69 0.697919
Target:  5'- cCUCGACG-CGUCGcCGCUUCGcGUCCg -3'
miRNA:   3'- cGGGCUGCuGUAGU-GCGGAGCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 81082 0.69 0.697919
Target:  5'- aGgUCGAUGGCGuUCGCGCUgggcgCGGGCUCg -3'
miRNA:   3'- -CgGGCUGCUGU-AGUGCGGa----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 137539 0.69 0.74584
Target:  5'- uGUUCGGCGACGgcccgucgUACGUCgucgCGAGCCg -3'
miRNA:   3'- -CGGGCUGCUGUa-------GUGCGGa---GCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 55887 0.69 0.70764
Target:  5'- -aCCGGCGGCggCAgG-CUCGGGCUCg -3'
miRNA:   3'- cgGGCUGCUGuaGUgCgGAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 138677 0.69 0.70764
Target:  5'- gGCUCGACGAgcucCAUCACGUCUuccgCGgacaGGCCUg -3'
miRNA:   3'- -CGGGCUGCU----GUAGUGCGGA----GC----UCGGG- -5'
7681 5' -57.9 NC_001973.1 + 61684 0.69 0.70764
Target:  5'- gGCgCGaaGCGGCGUCgGCGCgCUCGAGCa- -3'
miRNA:   3'- -CGgGC--UGCUGUAG-UGCG-GAGCUCGgg -5'
7681 5' -57.9 NC_001973.1 + 69425 0.69 0.744901
Target:  5'- aUCCGGCGuCGUugCGCGUCUCGuggucggucagcgGGCCCu -3'
miRNA:   3'- cGGGCUGCuGUA--GUGCGGAGC-------------UCGGG- -5'
7681 5' -57.9 NC_001973.1 + 56343 0.69 0.73641
Target:  5'- cGCUCG-CGGC--CGCG-CUCGGGCCCc -3'
miRNA:   3'- -CGGGCuGCUGuaGUGCgGAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 126691 0.69 0.73641
Target:  5'- -gCCGuuuCGGCGUCGCGCC--GGGCCa -3'
miRNA:   3'- cgGGCu--GCUGUAGUGCGGagCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 135883 0.69 0.726894
Target:  5'- uGCCCGAcCGACAgaGCGgCggucgCGGGCCg -3'
miRNA:   3'- -CGGGCU-GCUGUagUGCgGa----GCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 80183 0.69 0.726894
Target:  5'- uGCUCGGCGAgCAggccgagcgcgCACGCCgUCGAGUggCCg -3'
miRNA:   3'- -CGGGCUGCU-GUa----------GUGCGG-AGCUCG--GG- -5'
7681 5' -57.9 NC_001973.1 + 98802 0.69 0.717301
Target:  5'- uGCCCGgcGCGAUGUcCACGCUcaUGAcGCCCa -3'
miRNA:   3'- -CGGGC--UGCUGUA-GUGCGGa-GCU-CGGG- -5'
7681 5' -57.9 NC_001973.1 + 37206 0.69 0.717301
Target:  5'- aGCCCGgaaACGAgccu-CGCCaCGAGCCCg -3'
miRNA:   3'- -CGGGC---UGCUguaguGCGGaGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 7841 0.69 0.717301
Target:  5'- -aCgGGCGGCGcCGCGCCcgUCGAGCUg -3'
miRNA:   3'- cgGgCUGCUGUaGUGCGG--AGCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 111274 0.69 0.74584
Target:  5'- uGCCCGugGGCAacucggugguggUgGCGCCgcgCGugauGCUCa -3'
miRNA:   3'- -CGGGCugCUGU------------AgUGCGGa--GCu---CGGG- -5'
7681 5' -57.9 NC_001973.1 + 110806 0.69 0.70764
Target:  5'- --aCGACGACGaggcCGCGCCggaCGAGCuCCg -3'
miRNA:   3'- cggGCUGCUGUa---GUGCGGa--GCUCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.