miRNA display CGI


Results 41 - 60 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7681 5' -57.9 NC_001973.1 + 72081 0.77 0.330126
Target:  5'- aGCCCGAUGACAUCAUGCugccggUgacaucaucccuaacUCGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUGUAGUGCG------G---------------AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 159422 0.76 0.33963
Target:  5'- -aUCGACGuACGUCaaguugcaaaagaaACGCCUCGAGUCCg -3'
miRNA:   3'- cgGGCUGC-UGUAG--------------UGCGGAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 160677 0.76 0.349332
Target:  5'- -gCCGAUGAgAUCAUGCCuuaacUCGAGCUCg -3'
miRNA:   3'- cgGGCUGCUgUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 3581 0.75 0.372465
Target:  5'- -aCCGACGGCG-CGCGCUUCG-GCUCg -3'
miRNA:   3'- cgGGCUGCUGUaGUGCGGAGCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 21214 0.75 0.380404
Target:  5'- aGCCCGAUGACAUCAUGCCgaacUCG-GUg- -3'
miRNA:   3'- -CGGGCUGCUGUAGUGCGG----AGCuCGgg -5'
7681 5' -57.9 NC_001973.1 + 145026 0.75 0.380404
Target:  5'- cGCCCGaguGCGGCGcgaGCGCgUCGAGCgCCg -3'
miRNA:   3'- -CGGGC---UGCUGUag-UGCGgAGCUCG-GG- -5'
7681 5' -57.9 NC_001973.1 + 21138 0.75 0.388456
Target:  5'- -aCCGAUGAgAUCAUGCuucgCUCGAGCUCg -3'
miRNA:   3'- cgGGCUGCUgUAGUGCG----GAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 73825 0.75 0.404891
Target:  5'- cGCCCGACGAag--GCGaCCUCGAacgacaGCCCa -3'
miRNA:   3'- -CGGGCUGCUguagUGC-GGAGCU------CGGG- -5'
7681 5' -57.9 NC_001973.1 + 119880 0.75 0.404891
Target:  5'- -gCCGGCGACuAUCAgCGCCccuUgGAGCCCg -3'
miRNA:   3'- cgGGCUGCUG-UAGU-GCGG---AgCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 6416 0.74 0.421757
Target:  5'- uGCgCGGCGGCggCGCGCCgacgagCGcGCCCg -3'
miRNA:   3'- -CGgGCUGCUGuaGUGCGGa-----GCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 87456 0.74 0.421757
Target:  5'- gGCCCGACGGCGcgcagCAgGuCCUUGAGCUUc -3'
miRNA:   3'- -CGGGCUGCUGUa----GUgC-GGAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 100370 0.74 0.430348
Target:  5'- aCUCGACGACGuagccUCGCGCgUCGccGCCCa -3'
miRNA:   3'- cGGGCUGCUGU-----AGUGCGgAGCu-CGGG- -5'
7681 5' -57.9 NC_001973.1 + 47753 0.74 0.430348
Target:  5'- cGCCCGGCGGaAUCACGgccuCCUCGGcGCUCc -3'
miRNA:   3'- -CGGGCUGCUgUAGUGC----GGAGCU-CGGG- -5'
7681 5' -57.9 NC_001973.1 + 73373 0.74 0.430348
Target:  5'- uGCCCGGCGAUcgUACGgC-CGAGCgCg -3'
miRNA:   3'- -CGGGCUGCUGuaGUGCgGaGCUCGgG- -5'
7681 5' -57.9 NC_001973.1 + 39396 0.74 0.45672
Target:  5'- uGCUCGACGGCG-CGCGCCaggUCG-GCCg -3'
miRNA:   3'- -CGGGCUGCUGUaGUGCGG---AGCuCGGg -5'
7681 5' -57.9 NC_001973.1 + 96955 0.74 0.457614
Target:  5'- cGUUCGACGACuggCGCGCCgacacgcucuacccgCGAGCCg -3'
miRNA:   3'- -CGGGCUGCUGua-GUGCGGa--------------GCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 77688 0.74 0.465702
Target:  5'- cGCCCGACGAgGUCAagaacaacaGCCUCuGGUCg -3'
miRNA:   3'- -CGGGCUGCUgUAGUg--------CGGAGcUCGGg -5'
7681 5' -57.9 NC_001973.1 + 52188 0.74 0.465702
Target:  5'- aGCgCGGCGGgGUCGCGCgaCUCGAGCa- -3'
miRNA:   3'- -CGgGCUGCUgUAGUGCG--GAGCUCGgg -5'
7681 5' -57.9 NC_001973.1 + 37350 0.73 0.483936
Target:  5'- aGCCCGGaGACGagccuCGCCaCGAGCCCg -3'
miRNA:   3'- -CGGGCUgCUGUagu--GCGGaGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 16571 0.73 0.483936
Target:  5'- aGCCCGAUGAgAUCAUGCCgccgaUGAGaucauuCCCa -3'
miRNA:   3'- -CGGGCUGCUgUAGUGCGGa----GCUC------GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.