miRNA display CGI


Results 61 - 80 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7681 5' -57.9 NC_001973.1 + 41783 0.68 0.758884
Target:  5'- uGCCCGAgaaCGGCGggcgcgagugggugcUCgACGUggacUUCGAGCCCg -3'
miRNA:   3'- -CGGGCU---GCUGU---------------AG-UGCG----GAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 44592 0.67 0.817222
Target:  5'- aGCCCGcgGCGGCGgcgaGCgGgCUCG-GCCCg -3'
miRNA:   3'- -CGGGC--UGCUGUag--UG-CgGAGCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 44917 0.68 0.77263
Target:  5'- uGCgUGACGcGCGUCACGCCaaagucgccgcacUCGcacucGCCCg -3'
miRNA:   3'- -CGgGCUGC-UGUAGUGCGG-------------AGCu----CGGG- -5'
7681 5' -57.9 NC_001973.1 + 46515 0.69 0.714409
Target:  5'- cGCCCGACuACGaguacuacgCgACGCCUCGcaacagcgccgaccGGCCCg -3'
miRNA:   3'- -CGGGCUGcUGUa--------G-UGCGGAGC--------------UCGGG- -5'
7681 5' -57.9 NC_001973.1 + 47753 0.74 0.430348
Target:  5'- cGCCCGGCGGaAUCACGgccuCCUCGGcGCUCc -3'
miRNA:   3'- -CGGGCUGCUgUAGUGC----GGAGCU-CGGG- -5'
7681 5' -57.9 NC_001973.1 + 48393 0.66 0.878583
Target:  5'- cGCCCGACa--GUCgGCGCU--GAGCCUg -3'
miRNA:   3'- -CGGGCUGcugUAG-UGCGGagCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 48571 0.66 0.885381
Target:  5'- cGCgCCGACGACGacCAgaugcgguacgUGCUgcagacCGAGCCCa -3'
miRNA:   3'- -CG-GGCUGCUGUa-GU-----------GCGGa-----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 51530 0.67 0.831223
Target:  5'- gGCUguCGGCGAUAaauuucauguuaauUCGCGCCcgggcuauuuaaUCGAGCCg -3'
miRNA:   3'- -CGG--GCUGCUGU--------------AGUGCGG------------AGCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 52188 0.74 0.465702
Target:  5'- aGCgCGGCGGgGUCGCGCgaCUCGAGCa- -3'
miRNA:   3'- -CGgGCUGCUgUAGUGCG--GAGCUCGgg -5'
7681 5' -57.9 NC_001973.1 + 53855 0.73 0.502505
Target:  5'- cCCCGGCGGCGgcgGCGCCgcCGAGCgCg -3'
miRNA:   3'- cGGGCUGCUGUag-UGCGGa-GCUCGgG- -5'
7681 5' -57.9 NC_001973.1 + 55441 0.72 0.530919
Target:  5'- gGCCCGACGGCGcggCGgauCGUCUCGAaccuGUCCg -3'
miRNA:   3'- -CGGGCUGCUGUa--GU---GCGGAGCU----CGGG- -5'
7681 5' -57.9 NC_001973.1 + 55887 0.69 0.70764
Target:  5'- -aCCGGCGGCggCAgG-CUCGGGCUCg -3'
miRNA:   3'- cgGGCUGCUGuaGUgCgGAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 56052 0.7 0.638786
Target:  5'- cGCuCCGugGACAgggaGCGCUcgGAGCCUg -3'
miRNA:   3'- -CG-GGCugCUGUag--UGCGGagCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 56343 0.69 0.73641
Target:  5'- cGCUCG-CGGC--CGCG-CUCGGGCCCc -3'
miRNA:   3'- -CGGGCuGCUGuaGUGCgGAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 58437 0.66 0.856972
Target:  5'- aGCCCu-CGcCGUCGC-CCUgCGuGCCCg -3'
miRNA:   3'- -CGGGcuGCuGUAGUGcGGA-GCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 58728 0.66 0.885381
Target:  5'- cGgCCGACuuuguGCAgcggCGCGCCgUCGcGCCCc -3'
miRNA:   3'- -CgGGCUGc----UGUa---GUGCGG-AGCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 59031 0.66 0.871579
Target:  5'- uUCCGGCGACggCACGCU--GAcCCCg -3'
miRNA:   3'- cGGGCUGCUGuaGUGCGGagCUcGGG- -5'
7681 5' -57.9 NC_001973.1 + 59265 0.67 0.841601
Target:  5'- cGUCCGACGACGgcaUCAUcaGCagcaUCGAccggucgggccgGCCCg -3'
miRNA:   3'- -CGGGCUGCUGU---AGUG--CGg---AGCU------------CGGG- -5'
7681 5' -57.9 NC_001973.1 + 61128 0.72 0.550183
Target:  5'- --gCG-CGGCGUCGCuCCUCGAGCUCg -3'
miRNA:   3'- cggGCuGCUGUAGUGcGGAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 61684 0.69 0.70764
Target:  5'- gGCgCGaaGCGGCGUCgGCGCgCUCGAGCa- -3'
miRNA:   3'- -CGgGC--UGCUGUAG-UGCG-GAGCUCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.