miRNA display CGI


Results 81 - 100 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7681 5' -57.9 NC_001973.1 + 62705 0.66 0.885381
Target:  5'- --gCGACGACGUCGCGaaaaaCUU--GCCCa -3'
miRNA:   3'- cggGCUGCUGUAGUGCg----GAGcuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 62939 0.68 0.7993
Target:  5'- gGgCCGGCGuCGUCAguagacuUGCg-CGAGCCCg -3'
miRNA:   3'- -CgGGCUGCuGUAGU-------GCGgaGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 64182 0.67 0.848609
Target:  5'- uGCgCGACGACAUCaacuugguggaguGCGUCacCGcGCCCc -3'
miRNA:   3'- -CGgGCUGCUGUAG-------------UGCGGa-GCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 67402 0.68 0.803627
Target:  5'- gGCCCGgcgguguacACGACGaugggguaggagacuUCGCGCaggUCGGGCaCCg -3'
miRNA:   3'- -CGGGC---------UGCUGU---------------AGUGCGg--AGCUCG-GG- -5'
7681 5' -57.9 NC_001973.1 + 68793 0.7 0.65266
Target:  5'- aCUCGACGACAUgGCGCUgaaccgccaccgagaUCucGCCCa -3'
miRNA:   3'- cGGGCUGCUGUAgUGCGG---------------AGcuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 69425 0.69 0.744901
Target:  5'- aUCCGGCGuCGUugCGCGUCUCGuggucggucagcgGGCCCu -3'
miRNA:   3'- cGGGCUGCuGUA--GUGCGGAGC-------------UCGGG- -5'
7681 5' -57.9 NC_001973.1 + 70089 0.7 0.658598
Target:  5'- gGCUCGAUGuugugcgcgaGCGcgaACGCCUCGGcGCCCg -3'
miRNA:   3'- -CGGGCUGC----------UGUag-UGCGGAGCU-CGGG- -5'
7681 5' -57.9 NC_001973.1 + 71742 0.68 0.791423
Target:  5'- cGCCCG-CGGCcgCcccgGCCgcgcCGGGCCCc -3'
miRNA:   3'- -CGGGCuGCUGuaGug--CGGa---GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 72081 0.77 0.330126
Target:  5'- aGCCCGAUGACAUCAUGCugccggUgacaucaucccuaacUCGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUGUAGUGCG------G---------------AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 72186 0.67 0.80877
Target:  5'- -aUCGaAUGACAUCAUGCUgaagUUGAGCUCg -3'
miRNA:   3'- cgGGC-UGCUGUAGUGCGG----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 72263 0.83 0.12935
Target:  5'- aGCCCGAUGACAUCAUcccuaaCUCGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUGUAGUGcg----GAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 72341 0.83 0.12935
Target:  5'- aGCCCGAUGACAUCAUcccuaaCUCGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUGUAGUGcg----GAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 72450 0.7 0.638786
Target:  5'- --aUGAUGAUGUCAUGCCUaacCGAGCUCg -3'
miRNA:   3'- cggGCUGCUGUAGUGCGGA---GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 72849 0.72 0.540522
Target:  5'- aGUCCGAUGGacCGUCGcCGCCUCGcGCgCCu -3'
miRNA:   3'- -CGGGCUGCU--GUAGU-GCGGAGCuCG-GG- -5'
7681 5' -57.9 NC_001973.1 + 73373 0.74 0.430348
Target:  5'- uGCCCGGCGAUcgUACGgC-CGAGCgCg -3'
miRNA:   3'- -CGGGCUGCUGuaGUGCgGaGCUCGgG- -5'
7681 5' -57.9 NC_001973.1 + 73825 0.75 0.404891
Target:  5'- cGCCCGACGAag--GCGaCCUCGAacgacaGCCCa -3'
miRNA:   3'- -CGGGCUGCUguagUGC-GGAGCU------CGGG- -5'
7681 5' -57.9 NC_001973.1 + 74488 0.68 0.768076
Target:  5'- cGCUCGACG-CGUCgaACGUgugguuuucgggacaCUCGAGCaCCg -3'
miRNA:   3'- -CGGGCUGCuGUAG--UGCG---------------GAGCUCG-GG- -5'
7681 5' -57.9 NC_001973.1 + 76194 0.66 0.856972
Target:  5'- aGUUUuGCGAgCAUCAUGCagucCGAGCCCg -3'
miRNA:   3'- -CGGGcUGCU-GUAGUGCGga--GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 77362 0.66 0.871579
Target:  5'- -aCCGACGcgGCcgCGCGCCcgCGcGCCg -3'
miRNA:   3'- cgGGCUGC--UGuaGUGCGGa-GCuCGGg -5'
7681 5' -57.9 NC_001973.1 + 77688 0.74 0.465702
Target:  5'- cGCCCGACGAgGUCAagaacaacaGCCUCuGGUCg -3'
miRNA:   3'- -CGGGCUGCUgUAGUg--------CGGAGcUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.