miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7681 5' -57.9 NC_001973.1 + 155421 0.7 0.638786
Target:  5'- aGCCCGuuGAg--CcCGCuCUCGGGCCCg -3'
miRNA:   3'- -CGGGCugCUguaGuGCG-GAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 155379 0.72 0.569656
Target:  5'- gGCCCGuuGAg--CcCGCuCUCGAGCCCg -3'
miRNA:   3'- -CGGGCugCUguaGuGCG-GAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 154044 0.66 0.878583
Target:  5'- gGCCCGAUG-CAguuugaGUCUgucgaCGAGCCCg -3'
miRNA:   3'- -CGGGCUGCuGUagug--CGGA-----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 151195 0.84 0.114009
Target:  5'- -gCCGAUGACAUCAUGCCUCG-GCCg -3'
miRNA:   3'- cgGGCUGCUGUAGUGCGGAGCuCGGg -5'
7681 5' -57.9 NC_001973.1 + 151145 0.84 0.108086
Target:  5'- -gCCGAUGACAUCAUGCCUCGgccgaaagaauggGGCCCu -3'
miRNA:   3'- cgGGCUGCUGUAGUGCGGAGC-------------UCGGG- -5'
7681 5' -57.9 NC_001973.1 + 147914 0.67 0.841601
Target:  5'- cGCCUcuuGACGGCGcUUGCGUUUCGAGuguuCCCu -3'
miRNA:   3'- -CGGG---CUGCUGU-AGUGCGGAGCUC----GGG- -5'
7681 5' -57.9 NC_001973.1 + 145026 0.75 0.380404
Target:  5'- cGCCCGaguGCGGCGcgaGCGCgUCGAGCgCCg -3'
miRNA:   3'- -CGGGC---UGCUGUag-UGCGgAGCUCG-GG- -5'
7681 5' -57.9 NC_001973.1 + 144717 0.67 0.825515
Target:  5'- cGUCCGAgGACAUCgaGCGCCaggCGgcggcggaggcGGCCg -3'
miRNA:   3'- -CGGGCUgCUGUAG--UGCGGa--GC-----------UCGGg -5'
7681 5' -57.9 NC_001973.1 + 144023 0.68 0.800168
Target:  5'- gGCCCGcaGCGACcuucaaaucauGUC-CGCCaaCGAGCCg -3'
miRNA:   3'- -CGGGC--UGCUG-----------UAGuGCGGa-GCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 142414 0.66 0.871579
Target:  5'- -gCCGGCaGACgAUCGUGCCcggCGAGCCg -3'
miRNA:   3'- cgGGCUG-CUG-UAGUGCGGa--GCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 140884 0.67 0.841601
Target:  5'- aUCUGcGCGGCGUCGCGCg-CGAcccaGCCCu -3'
miRNA:   3'- cGGGC-UGCUGUAGUGCGgaGCU----CGGG- -5'
7681 5' -57.9 NC_001973.1 + 140691 0.66 0.859956
Target:  5'- aGCCCGGC-ACGUCcguguACGCCaccaacuguuugugCGGGaCCCg -3'
miRNA:   3'- -CGGGCUGcUGUAG-----UGCGGa-------------GCUC-GGG- -5'
7681 5' -57.9 NC_001973.1 + 139318 0.67 0.841601
Target:  5'- cGUCCG-CGGCGauagcguuuaUCACGCCggUCGcGUCCg -3'
miRNA:   3'- -CGGGCuGCUGU----------AGUGCGG--AGCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 138677 0.69 0.70764
Target:  5'- gGCUCGACGAgcucCAUCACGUCUuccgCGgacaGGCCUg -3'
miRNA:   3'- -CGGGCUGCU----GUAGUGCGGA----GC----UCGGG- -5'
7681 5' -57.9 NC_001973.1 + 137539 0.69 0.74584
Target:  5'- uGUUCGGCGACGgcccgucgUACGUCgucgCGAGCCg -3'
miRNA:   3'- -CGGGCUGCUGUa-------GUGCGGa---GCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 135933 0.67 0.841601
Target:  5'- gGCgCGGCGAUggCGCGCCaaGuGCgCCa -3'
miRNA:   3'- -CGgGCUGCUGuaGUGCGGagCuCG-GG- -5'
7681 5' -57.9 NC_001973.1 + 135883 0.69 0.726894
Target:  5'- uGCCCGAcCGACAgaGCGgCggucgCGGGCCg -3'
miRNA:   3'- -CGGGCU-GCUGUagUGCgGa----GCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 133737 0.66 0.856972
Target:  5'- cGCCCGucuCgGGCGUCACGUUgaacgCGGGCa- -3'
miRNA:   3'- -CGGGCu--G-CUGUAGUGCGGa----GCUCGgg -5'
7681 5' -57.9 NC_001973.1 + 133687 0.67 0.825515
Target:  5'- -aCCGGCGACAgUAgGCCUCGuugaacucGCCg -3'
miRNA:   3'- cgGGCUGCUGUaGUgCGGAGCu-------CGGg -5'
7681 5' -57.9 NC_001973.1 + 132450 0.67 0.80877
Target:  5'- gGCgCCGGCGGgG-CGCgGCCUCGucgGGCUCg -3'
miRNA:   3'- -CG-GGCUGCUgUaGUG-CGGAGC---UCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.