miRNA display CGI


Results 41 - 60 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7681 5' -57.9 NC_001973.1 + 131186 0.66 0.878583
Target:  5'- uUUCGAgGGCGU-GCcCCUUGAGCCCu -3'
miRNA:   3'- cGGGCUgCUGUAgUGcGGAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 130928 0.92 0.034421
Target:  5'- aGCCCGAUGACAUCAUGCCcaaacUCGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 130850 0.87 0.069961
Target:  5'- aCCCGAUGACAUCAUGCCuaaacUCGAGCUCg -3'
miRNA:   3'- cGGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 130753 0.83 0.12935
Target:  5'- -aCCGAUGACAUCAUGCCcaaacUCGAGCUCg -3'
miRNA:   3'- cgGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 130673 0.85 0.095372
Target:  5'- aGCCCGAUGAgAUCAUGCCuaaacUCGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUgUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 130596 0.88 0.068165
Target:  5'- aCCCGAUGACAUCAUGCCUaaacCGAGCUCg -3'
miRNA:   3'- cGGGCUGCUGUAGUGCGGA----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 130512 0.67 0.849379
Target:  5'- cGCgUCGGCGgauaACAUCGUGCCUaaacCGAGCUCg -3'
miRNA:   3'- -CG-GGCUGC----UGUAGUGCGGA----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 129359 0.71 0.618955
Target:  5'- -gCCGAUGAgAUCACGCC-CaAGCUCg -3'
miRNA:   3'- cgGGCUGCUgUAGUGCGGaGcUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 129281 0.83 0.139449
Target:  5'- -gCCGAUGACAUCAUGCCcaaacUCGAGCUCg -3'
miRNA:   3'- cgGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 129203 0.87 0.069961
Target:  5'- aCCCGAUGACAUCAUGCCcaaacUCGAGCUCg -3'
miRNA:   3'- cGGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 129037 0.82 0.161843
Target:  5'- -aCCGAUGACAUCAUGCCUaaacUGAGCUCg -3'
miRNA:   3'- cgGGCUGCUGUAGUGCGGA----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 128957 0.7 0.668477
Target:  5'- gGgUCGAUGAgAUCAUGCucaaaCUCGAGCUCg -3'
miRNA:   3'- -CgGGCUGCUgUAGUGCG-----GAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 128480 0.67 0.825515
Target:  5'- uGUCCGACGGCGcguccuugcUCAUGCUguaCucGCCCu -3'
miRNA:   3'- -CGGGCUGCUGU---------AGUGCGGa--GcuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 127568 0.79 0.232437
Target:  5'- -gCCGAUGAgAUCACGCCcaagcUCGAGCUCg -3'
miRNA:   3'- cgGGCUGCUgUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 127490 0.86 0.0883
Target:  5'- aCCCGAUGACAUCAUGCCUaaacUGAGCUCg -3'
miRNA:   3'- cGGGCUGCUGUAGUGCGGA----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 127412 0.83 0.12935
Target:  5'- -aCCGAUGACAUCAUGCCuaaacUCGAGCUCg -3'
miRNA:   3'- cgGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 127336 0.72 0.579458
Target:  5'- --nCGAUGAgAUCACGCCUaaacUGAGCUCg -3'
miRNA:   3'- cggGCUGCUgUAGUGCGGA----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 127311 1.14 0.001204
Target:  5'- gGCCCGACGACAUCACGCCUCGAGCCCg -3'
miRNA:   3'- -CGGGCUGCUGUAGUGCGGAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 126691 0.69 0.73641
Target:  5'- -gCCGuuuCGGCGUCGCGCC--GGGCCa -3'
miRNA:   3'- cgGGCu--GCUGUAGUGCGGagCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 124309 0.67 0.849379
Target:  5'- -gUCGGCGGCA-CGCGCUcgagCGAGCUg -3'
miRNA:   3'- cgGGCUGCUGUaGUGCGGa---GCUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.