Results 41 - 60 of 216 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7681 | 5' | -57.9 | NC_001973.1 | + | 99657 | 0.66 | 0.885381 |
Target: 5'- -aCUGGCGAUugaugCGCGCCaUCGucucccGCCCg -3' miRNA: 3'- cgGGCUGCUGua---GUGCGG-AGCu-----CGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 115359 | 0.66 | 0.885381 |
Target: 5'- cGCCCGAgGACAUCGaGCaCUacguggacgCGA-CCCg -3' miRNA: 3'- -CGGGCUgCUGUAGUgCG-GA---------GCUcGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 37082 | 0.66 | 0.885381 |
Target: 5'- cGCCCGAuucCGAgGaC-CGCCgcCGAGCCg -3' miRNA: 3'- -CGGGCU---GCUgUaGuGCGGa-GCUCGGg -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 48571 | 0.66 | 0.885381 |
Target: 5'- cGCgCCGACGACGacCAgaugcgguacgUGCUgcagacCGAGCCCa -3' miRNA: 3'- -CG-GGCUGCUGUa-GU-----------GCGGa-----GCUCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 110342 | 0.66 | 0.885381 |
Target: 5'- uGCUgGACG-CGuUCGcCGCCUCGgcGGCCg -3' miRNA: 3'- -CGGgCUGCuGU-AGU-GCGGAGC--UCGGg -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 121840 | 0.66 | 0.871579 |
Target: 5'- gGCCCGAacCGGuuUCGgcCGCCgCGAcGCCCg -3' miRNA: 3'- -CGGGCU--GCUguAGU--GCGGaGCU-CGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 82957 | 0.66 | 0.871579 |
Target: 5'- -aCCGACGcccGCGUCGcCGCCgcCGccGCCCa -3' miRNA: 3'- cgGGCUGC---UGUAGU-GCGGa-GCu-CGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 16180 | 0.66 | 0.856972 |
Target: 5'- cGCCCGuguCGGCG-CAgGCCgcuaGAGCgCg -3' miRNA: 3'- -CGGGCu--GCUGUaGUgCGGag--CUCGgG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 58437 | 0.66 | 0.856972 |
Target: 5'- aGCCCu-CGcCGUCGC-CCUgCGuGCCCg -3' miRNA: 3'- -CGGGcuGCuGUAGUGcGGA-GCuCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 106677 | 0.66 | 0.856972 |
Target: 5'- cGCUCGACGAUcUCgACGUCgcuuuggCGGGCgCg -3' miRNA: 3'- -CGGGCUGCUGuAG-UGCGGa------GCUCGgG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 133737 | 0.66 | 0.856972 |
Target: 5'- cGCCCGucuCgGGCGUCACGUUgaacgCGGGCa- -3' miRNA: 3'- -CGGGCu--G-CUGUAGUGCGGa----GCUCGgg -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 140691 | 0.66 | 0.859956 |
Target: 5'- aGCCCGGC-ACGUCcguguACGCCaccaacuguuugugCGGGaCCCg -3' miRNA: 3'- -CGGGCUGcUGUAG-----UGCGGa-------------GCUC-GGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 123993 | 0.66 | 0.870867 |
Target: 5'- --aCGGCGACGUCGCGgCCugaccagUCGGGCg- -3' miRNA: 3'- cggGCUGCUGUAGUGC-GG-------AGCUCGgg -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 59031 | 0.66 | 0.871579 |
Target: 5'- uUCCGGCGACggCACGCU--GAcCCCg -3' miRNA: 3'- cGGGCUGCUGuaGUGCGGagCUcGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 93752 | 0.66 | 0.871579 |
Target: 5'- cGCCCGGCGAC--CAgGag-CGGGCCg -3' miRNA: 3'- -CGGGCUGCUGuaGUgCggaGCUCGGg -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 94672 | 0.66 | 0.871579 |
Target: 5'- aGCCgGGCGACA-CG-GCCUaCGuGCUCu -3' miRNA: 3'- -CGGgCUGCUGUaGUgCGGA-GCuCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 101969 | 0.66 | 0.871579 |
Target: 5'- --gCGGCGACGaugCGCGCCagCGuGUCCg -3' miRNA: 3'- cggGCUGCUGUa--GUGCGGa-GCuCGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 142414 | 0.66 | 0.871579 |
Target: 5'- -gCCGGCaGACgAUCGUGCCcggCGAGCCg -3' miRNA: 3'- cgGGCUG-CUG-UAGUGCGGa--GCUCGGg -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 39007 | 0.66 | 0.871579 |
Target: 5'- cGCgCCGACGACuAUCcgaaaAUGgCUCGuaacGCCCc -3' miRNA: 3'- -CG-GGCUGCUG-UAG-----UGCgGAGCu---CGGG- -5' |
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7681 | 5' | -57.9 | NC_001973.1 | + | 77362 | 0.66 | 0.871579 |
Target: 5'- -aCCGACGcgGCcgCGCGCCcgCGcGCCg -3' miRNA: 3'- cgGGCUGC--UGuaGUGCGGa-GCuCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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