miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7681 5' -57.9 NC_001973.1 + 77362 0.66 0.871579
Target:  5'- -aCCGACGcgGCcgCGCGCCcgCGcGCCg -3'
miRNA:   3'- cgGGCUGC--UGuaGUGCGGa-GCuCGGg -5'
7681 5' -57.9 NC_001973.1 + 82957 0.66 0.871579
Target:  5'- -aCCGACGcccGCGUCGcCGCCgcCGccGCCCa -3'
miRNA:   3'- cgGGCUGC---UGUAGU-GCGGa-GCu-CGGG- -5'
7681 5' -57.9 NC_001973.1 + 121840 0.66 0.871579
Target:  5'- gGCCCGAacCGGuuUCGgcCGCCgCGAcGCCCg -3'
miRNA:   3'- -CGGGCU--GCUguAGU--GCGGaGCU-CGGG- -5'
7681 5' -57.9 NC_001973.1 + 123993 0.66 0.870867
Target:  5'- --aCGGCGACGUCGCGgCCugaccagUCGGGCg- -3'
miRNA:   3'- cggGCUGCUGUAGUGC-GG-------AGCUCGgg -5'
7681 5' -57.9 NC_001973.1 + 140691 0.66 0.859956
Target:  5'- aGCCCGGC-ACGUCcguguACGCCaccaacuguuugugCGGGaCCCg -3'
miRNA:   3'- -CGGGCUGcUGUAG-----UGCGGa-------------GCUC-GGG- -5'
7681 5' -57.9 NC_001973.1 + 76194 0.66 0.856972
Target:  5'- aGUUUuGCGAgCAUCAUGCagucCGAGCCCg -3'
miRNA:   3'- -CGGGcUGCU-GUAGUGCGga--GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 93039 0.66 0.856972
Target:  5'- aGCCgGGCGu--UUACGCgUUGAugGCCCg -3'
miRNA:   3'- -CGGgCUGCuguAGUGCGgAGCU--CGGG- -5'
7681 5' -57.9 NC_001973.1 + 16180 0.66 0.856972
Target:  5'- cGCCCGuguCGGCG-CAgGCCgcuaGAGCgCg -3'
miRNA:   3'- -CGGGCu--GCUGUaGUgCGGag--CUCGgG- -5'
7681 5' -57.9 NC_001973.1 + 58437 0.66 0.856972
Target:  5'- aGCCCu-CGcCGUCGC-CCUgCGuGCCCg -3'
miRNA:   3'- -CGGGcuGCuGUAGUGcGGA-GCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 106677 0.66 0.856972
Target:  5'- cGCUCGACGAUcUCgACGUCgcuuuggCGGGCgCg -3'
miRNA:   3'- -CGGGCUGCUGuAG-UGCGGa------GCUCGgG- -5'
7681 5' -57.9 NC_001973.1 + 133737 0.66 0.856972
Target:  5'- cGCCCGucuCgGGCGUCACGUUgaacgCGGGCa- -3'
miRNA:   3'- -CGGGCu--G-CUGUAGUGCGGa----GCUCGgg -5'
7681 5' -57.9 NC_001973.1 + 115038 0.66 0.856221
Target:  5'- aCCCGAucgacccCGGCGUC-CGCCgagcUCGAGCa- -3'
miRNA:   3'- cGGGCU-------GCUGUAGuGCGG----AGCUCGgg -5'
7681 5' -57.9 NC_001973.1 + 1127 0.66 0.855468
Target:  5'- cGCCCcuuuauaGUCGCGCCUCG-GCuCCg -3'
miRNA:   3'- -CGGGcugcug-UAGUGCGGAGCuCG-GG- -5'
7681 5' -57.9 NC_001973.1 + 25090 0.67 0.849379
Target:  5'- -aCCGACcgguGCAgCACGCUcaUCGAGaCCCa -3'
miRNA:   3'- cgGGCUGc---UGUaGUGCGG--AGCUC-GGG- -5'
7681 5' -57.9 NC_001973.1 + 115780 0.67 0.849379
Target:  5'- cGCgCGGCcGACAUCAaagccaGCCUCGGcgagcacuuuGCCg -3'
miRNA:   3'- -CGgGCUG-CUGUAGUg-----CGGAGCU----------CGGg -5'
7681 5' -57.9 NC_001973.1 + 124309 0.67 0.849379
Target:  5'- -gUCGGCGGCA-CGCGCUcgagCGAGCUg -3'
miRNA:   3'- cgGGCUGCUGUaGUGCGGa---GCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 130512 0.67 0.849379
Target:  5'- cGCgUCGGCGgauaACAUCGUGCCUaaacCGAGCUCg -3'
miRNA:   3'- -CG-GGCUGC----UGUAGUGCGGA----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 568 0.67 0.849379
Target:  5'- cGCCCaGCGACGg---GCa-CGAGCCCg -3'
miRNA:   3'- -CGGGcUGCUGUagugCGgaGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 64182 0.67 0.848609
Target:  5'- uGCgCGACGACAUCaacuugguggaguGCGUCacCGcGCCCc -3'
miRNA:   3'- -CGgGCUGCUGUAG-------------UGCGGa-GCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 147914 0.67 0.841601
Target:  5'- cGCCUcuuGACGGCGcUUGCGUUUCGAGuguuCCCu -3'
miRNA:   3'- -CGGG---CUGCUGU-AGUGCGGAGCUC----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.