miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7682 3' -49.5 NC_001973.1 + 124195 0.66 0.999087
Target:  5'- cGCGAG---GUCGCG-GCGgc-GCGCCg -3'
miRNA:   3'- -CGUUUaagUAGCGCgCGCaguUGCGG- -5'
7682 3' -49.5 NC_001973.1 + 52479 0.66 0.999087
Target:  5'- aGCAGAUcCAUUGUGagagaGCG-C-GCGCCg -3'
miRNA:   3'- -CGUUUAaGUAGCGCg----CGCaGuUGCGG- -5'
7682 3' -49.5 NC_001973.1 + 823 0.66 0.999087
Target:  5'- uGCAGugguaGUCGUGCGCGuUCGgguucugcACGCa -3'
miRNA:   3'- -CGUUuaag-UAGCGCGCGC-AGU--------UGCGg -5'
7682 3' -49.5 NC_001973.1 + 15534 0.66 0.999087
Target:  5'- ------aCGUUGCGCGCGagCAgauccguguuguGCGCCc -3'
miRNA:   3'- cguuuaaGUAGCGCGCGCa-GU------------UGCGG- -5'
7682 3' -49.5 NC_001973.1 + 21547 0.66 0.999087
Target:  5'- ------gCGUCGgGCGCGcCGugGUCc -3'
miRNA:   3'- cguuuaaGUAGCgCGCGCaGUugCGG- -5'
7682 3' -49.5 NC_001973.1 + 70140 0.66 0.999087
Target:  5'- aGCAuggug--CGCaGCGCGUCcGCGUCc -3'
miRNA:   3'- -CGUuuaaguaGCG-CGCGCAGuUGCGG- -5'
7682 3' -49.5 NC_001973.1 + 96507 0.66 0.998887
Target:  5'- cGCugccgCAUCGUGCGCuUCGcucgaGCGCg -3'
miRNA:   3'- -CGuuuaaGUAGCGCGCGcAGU-----UGCGg -5'
7682 3' -49.5 NC_001973.1 + 132801 0.66 0.998887
Target:  5'- gGCAGcauUUCgAUCauguCGCGCGUCu-CGCCc -3'
miRNA:   3'- -CGUUu--AAG-UAGc---GCGCGCAGuuGCGG- -5'
7682 3' -49.5 NC_001973.1 + 13357 0.66 0.998887
Target:  5'- uGCugug-CGUgGCGCGCGacggaacaacauUUAugGCCa -3'
miRNA:   3'- -CGuuuaaGUAgCGCGCGC------------AGUugCGG- -5'
7682 3' -49.5 NC_001973.1 + 16073 0.66 0.998887
Target:  5'- ----uUUCgAUCGCGUcUGUCGGCGCg -3'
miRNA:   3'- cguuuAAG-UAGCGCGcGCAGUUGCGg -5'
7682 3' -49.5 NC_001973.1 + 77001 0.66 0.998887
Target:  5'- cGCuGAUcaccUCGUCGgGCGgCGgCGGCGCg -3'
miRNA:   3'- -CGuUUA----AGUAGCgCGC-GCaGUUGCGg -5'
7682 3' -49.5 NC_001973.1 + 72862 0.66 0.998887
Target:  5'- -----gUCGccgccUCGCGCGCcUC-GCGCCa -3'
miRNA:   3'- cguuuaAGU-----AGCGCGCGcAGuUGCGG- -5'
7682 3' -49.5 NC_001973.1 + 86586 0.66 0.998887
Target:  5'- gGCGGAgc--UCGCGCGCGcCG--GCCu -3'
miRNA:   3'- -CGUUUaaguAGCGCGCGCaGUugCGG- -5'
7682 3' -49.5 NC_001973.1 + 86668 0.66 0.998887
Target:  5'- -aAAAUggacgCGCGCGcCGUCGaguaccACGCCu -3'
miRNA:   3'- cgUUUAagua-GCGCGC-GCAGU------UGCGG- -5'
7682 3' -49.5 NC_001973.1 + 121506 0.66 0.998887
Target:  5'- cGCGAAgUCGUUcaGCGCG--AACGCCg -3'
miRNA:   3'- -CGUUUaAGUAGcgCGCGCagUUGCGG- -5'
7682 3' -49.5 NC_001973.1 + 137048 0.66 0.998887
Target:  5'- cGCAG----GUCGUGCGCGcCAcuuCGUCg -3'
miRNA:   3'- -CGUUuaagUAGCGCGCGCaGUu--GCGG- -5'
7682 3' -49.5 NC_001973.1 + 31524 0.66 0.998887
Target:  5'- cCAAAUUU----UGCGCGUCAuCGCCc -3'
miRNA:   3'- cGUUUAAGuagcGCGCGCAGUuGCGG- -5'
7682 3' -49.5 NC_001973.1 + 133136 0.66 0.99875
Target:  5'- cGCGGGUaUCaAUUGCGUGCucauuuucuugagCAGCGCCu -3'
miRNA:   3'- -CGUUUA-AG-UAGCGCGCGca-----------GUUGCGG- -5'
7682 3' -49.5 NC_001973.1 + 134337 0.66 0.998651
Target:  5'- gGCGuGUaCGUgGUgGCGC-UCGACGCCg -3'
miRNA:   3'- -CGUuUAaGUAgCG-CGCGcAGUUGCGG- -5'
7682 3' -49.5 NC_001973.1 + 122706 0.66 0.998651
Target:  5'- aGCAGucGUUCGacCGCGC-CGUCGGuCGCg -3'
miRNA:   3'- -CGUU--UAAGUa-GCGCGcGCAGUU-GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.