miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7682 3' -49.5 NC_001973.1 + 823 0.66 0.999087
Target:  5'- uGCAGugguaGUCGUGCGCGuUCGgguucugcACGCa -3'
miRNA:   3'- -CGUUuaag-UAGCGCGCGC-AGU--------UGCGg -5'
7682 3' -49.5 NC_001973.1 + 890 0.7 0.970141
Target:  5'- gGCcg--UCAgcUCGCGCGCGUUcucgAGcCGCCg -3'
miRNA:   3'- -CGuuuaAGU--AGCGCGCGCAG----UU-GCGG- -5'
7682 3' -49.5 NC_001973.1 + 1372 0.69 0.986347
Target:  5'- cGCGcGUcCggCGCGCGCcaaacucuaGUCGACGCUu -3'
miRNA:   3'- -CGUuUAaGuaGCGCGCG---------CAGUUGCGG- -5'
7682 3' -49.5 NC_001973.1 + 4167 0.69 0.982646
Target:  5'- gGUggGUcCGUCGcCGCGCauGUUgaAACGCCg -3'
miRNA:   3'- -CGuuUAaGUAGC-GCGCG--CAG--UUGCGG- -5'
7682 3' -49.5 NC_001973.1 + 5058 0.67 0.995501
Target:  5'- cGCAGcgUCAagcgggggaCGCGCGCGgcguuGCGCa -3'
miRNA:   3'- -CGUUuaAGUa--------GCGCGCGCagu--UGCGg -5'
7682 3' -49.5 NC_001973.1 + 5825 0.69 0.988989
Target:  5'- -gGAGUUCGccgaUCuGgGCGCGUCGuucggcgagcgcacGCGCCg -3'
miRNA:   3'- cgUUUAAGU----AG-CgCGCGCAGU--------------UGCGG- -5'
7682 3' -49.5 NC_001973.1 + 6110 0.68 0.993735
Target:  5'- cGCAugacg---GCGCGCGagGGCGCCg -3'
miRNA:   3'- -CGUuuaaguagCGCGCGCagUUGCGG- -5'
7682 3' -49.5 NC_001973.1 + 6575 0.68 0.991909
Target:  5'- cGCAAcaUCGUCGgGCGCGagaUCGACu-- -3'
miRNA:   3'- -CGUUuaAGUAGCgCGCGC---AGUUGcgg -5'
7682 3' -49.5 NC_001973.1 + 7085 0.74 0.876689
Target:  5'- cGCGAGUUgaGUCcgGCGCGCG-CGACcGCCg -3'
miRNA:   3'- -CGUUUAAg-UAG--CGCGCGCaGUUG-CGG- -5'
7682 3' -49.5 NC_001973.1 + 7254 0.7 0.980534
Target:  5'- aGCAGAUgcgCAgcgggcUCgGCGCGCGgc-GCGCCc -3'
miRNA:   3'- -CGUUUAa--GU------AG-CGCGCGCaguUGCGG- -5'
7682 3' -49.5 NC_001973.1 + 7977 0.66 0.998651
Target:  5'- cGCGAuug---UGCGCGCGUaCGAccCGCCc -3'
miRNA:   3'- -CGUUuaaguaGCGCGCGCA-GUU--GCGG- -5'
7682 3' -49.5 NC_001973.1 + 8061 0.72 0.943378
Target:  5'- -----cUCGUCGCGCugGCGcUCGGCGCg -3'
miRNA:   3'- cguuuaAGUAGCGCG--CGC-AGUUGCGg -5'
7682 3' -49.5 NC_001973.1 + 8433 0.77 0.763185
Target:  5'- cGCcGcgUCGUCGCGCcCGUCGACGaaCCg -3'
miRNA:   3'- -CGuUuaAGUAGCGCGcGCAGUUGC--GG- -5'
7682 3' -49.5 NC_001973.1 + 10298 0.74 0.88399
Target:  5'- cGCGAAgcccgCGUCGCaCGCG-CAGCGCa -3'
miRNA:   3'- -CGUUUaa---GUAGCGcGCGCaGUUGCGg -5'
7682 3' -49.5 NC_001973.1 + 10495 0.68 0.991909
Target:  5'- uGCAcgagCGggCGCGCucGCGguUCAGCGCCa -3'
miRNA:   3'- -CGUuuaaGUa-GCGCG--CGC--AGUUGCGG- -5'
7682 3' -49.5 NC_001973.1 + 10636 0.69 0.982646
Target:  5'- cGCAA--UCggCGUGCgaccugcacgGCGUCGGCGUCg -3'
miRNA:   3'- -CGUUuaAGuaGCGCG----------CGCAGUUGCGG- -5'
7682 3' -49.5 NC_001973.1 + 10758 0.7 0.978236
Target:  5'- gGCGGGUgcgcgacgggcUCGUCGUGUugcaccagcaGCGUCGcguagGCGCCg -3'
miRNA:   3'- -CGUUUA-----------AGUAGCGCG----------CGCAGU-----UGCGG- -5'
7682 3' -49.5 NC_001973.1 + 10817 0.7 0.975743
Target:  5'- gGCGAGa--AUCGCcacgaggagcaGCGUGaUCAGCGCCa -3'
miRNA:   3'- -CGUUUaagUAGCG-----------CGCGC-AGUUGCGG- -5'
7682 3' -49.5 NC_001973.1 + 11361 0.68 0.992663
Target:  5'- gGCGAGUUUGUCG-GUGCGuucgguaacggcuaUCAAUGCUu -3'
miRNA:   3'- -CGUUUAAGUAGCgCGCGC--------------AGUUGCGG- -5'
7682 3' -49.5 NC_001973.1 + 13357 0.66 0.998887
Target:  5'- uGCugug-CGUgGCGCGCGacggaacaacauUUAugGCCa -3'
miRNA:   3'- -CGuuuaaGUAgCGCGCGC------------AGUugCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.