miRNA display CGI


Results 1 - 20 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7682 5' -56.6 NC_001973.1 + 71737 0.66 0.92792
Target:  5'- cCCGGCGCccgcGGCCGcCcCGgcCGcgCCg -3'
miRNA:   3'- -GGCCGCGa---CCGGCuGcGCaaGUuaGG- -5'
7682 5' -56.6 NC_001973.1 + 59895 0.66 0.92792
Target:  5'- gCGGCGCggugucGGCCaACGCGagcCAG-CCg -3'
miRNA:   3'- gGCCGCGa-----CCGGcUGCGCaa-GUUaGG- -5'
7682 5' -56.6 NC_001973.1 + 90106 0.66 0.92792
Target:  5'- gCCGGCGCcgaaaagcuUGcGauGGCGCGUUCAcaagcGUCa -3'
miRNA:   3'- -GGCCGCG---------AC-CggCUGCGCAAGU-----UAGg -5'
7682 5' -56.6 NC_001973.1 + 82508 0.66 0.92792
Target:  5'- gCCGGCGUcgcGGCCGGCcuGCaGUUgGGUUUu -3'
miRNA:   3'- -GGCCGCGa--CCGGCUG--CG-CAAgUUAGG- -5'
7682 5' -56.6 NC_001973.1 + 26173 0.66 0.92792
Target:  5'- gCCGGCGCgGGCgcguCGACgGCGcucCAGUUg -3'
miRNA:   3'- -GGCCGCGaCCG----GCUG-CGCaa-GUUAGg -5'
7682 5' -56.6 NC_001973.1 + 85654 0.66 0.927404
Target:  5'- gCCGGCGaucagccGGaccagcaCCGACGCGUUgCuguuGUCCu -3'
miRNA:   3'- -GGCCGCga-----CC-------GGCUGCGCAA-Gu---UAGG- -5'
7682 5' -56.6 NC_001973.1 + 8406 0.66 0.926365
Target:  5'- uUGGCGCUgGGCgCGAacggcaagagccgcCGCGUcgUCGcgCCc -3'
miRNA:   3'- gGCCGCGA-CCG-GCU--------------GCGCA--AGUuaGG- -5'
7682 5' -56.6 NC_001973.1 + 87541 0.66 0.922657
Target:  5'- gCCGGUGCcGGUCGAgGCcgcaUCGGcgguUCCg -3'
miRNA:   3'- -GGCCGCGaCCGGCUgCGca--AGUU----AGG- -5'
7682 5' -56.6 NC_001973.1 + 97971 0.66 0.922657
Target:  5'- uUCGG-GCacgGGCaCGACGCGgucgCGGUCg -3'
miRNA:   3'- -GGCCgCGa--CCG-GCUGCGCaa--GUUAGg -5'
7682 5' -56.6 NC_001973.1 + 139864 0.66 0.922657
Target:  5'- aCCGGUGCUGGCaccacuugauCGgcaagcucgaGCGCGUggugUCGGUgCu -3'
miRNA:   3'- -GGCCGCGACCG----------GC----------UGCGCA----AGUUAgG- -5'
7682 5' -56.6 NC_001973.1 + 16044 0.66 0.922657
Target:  5'- aCGcGCGCcGGCCGGaguuaauaguCGUGUuUCGAUCg -3'
miRNA:   3'- gGC-CGCGaCCGGCU----------GCGCA-AGUUAGg -5'
7682 5' -56.6 NC_001973.1 + 23672 0.66 0.922657
Target:  5'- aUCGGUGCUcgcgGGCCuccGCGCGUcgaCGcgCCa -3'
miRNA:   3'- -GGCCGCGA----CCGGc--UGCGCAa--GUuaGG- -5'
7682 5' -56.6 NC_001973.1 + 110672 0.66 0.922657
Target:  5'- aCGGCGagaUGaCCGugGCGggCAAaaaguuuuUCCu -3'
miRNA:   3'- gGCCGCg--ACcGGCugCGCaaGUU--------AGG- -5'
7682 5' -56.6 NC_001973.1 + 143519 0.66 0.919389
Target:  5'- gCCGGUgacgcgcccgauGCUGGCCGgcucgaagccuuugcGCGCGcUCAucacgugCCa -3'
miRNA:   3'- -GGCCG------------CGACCGGC---------------UGCGCaAGUua-----GG- -5'
7682 5' -56.6 NC_001973.1 + 29973 0.66 0.917166
Target:  5'- gCCGGCucGgUGGUgGGCGCGUau-AUCUg -3'
miRNA:   3'- -GGCCG--CgACCGgCUGCGCAaguUAGG- -5'
7682 5' -56.6 NC_001973.1 + 119295 0.66 0.917166
Target:  5'- -gGGUGUUGaCCGuCGCGUUCAAg-- -3'
miRNA:   3'- ggCCGCGACcGGCuGCGCAAGUUagg -5'
7682 5' -56.6 NC_001973.1 + 158635 0.66 0.917166
Target:  5'- cCCGGCGCgc-CCGACGaccCGUUCGGc-- -3'
miRNA:   3'- -GGCCGCGaccGGCUGC---GCAAGUUagg -5'
7682 5' -56.6 NC_001973.1 + 13352 0.66 0.916604
Target:  5'- cCCGGUGCUGuGCgUGGCGCGcgacggaacaacaUUUAuggCCa -3'
miRNA:   3'- -GGCCGCGAC-CG-GCUGCGC-------------AAGUua-GG- -5'
7682 5' -56.6 NC_001973.1 + 115101 0.66 0.914906
Target:  5'- -aGGCGCgaugucugagccgGGCgGAucCG-GUUCAGUCCg -3'
miRNA:   3'- ggCCGCGa------------CCGgCU--GCgCAAGUUAGG- -5'
7682 5' -56.6 NC_001973.1 + 14360 0.66 0.911448
Target:  5'- gUCGGCG-UGGUCGACGgGgcgcggCGAggCCg -3'
miRNA:   3'- -GGCCGCgACCGGCUGCgCaa----GUUa-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.