miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7683 3' -56.3 NC_001973.1 + 13319 0.66 0.893688
Target:  5'- cGCgGUGCaGUaCCCgGCgGACGAGCGCa -3'
miRNA:   3'- uUGaCAUG-CAcGGG-UGgCUGCUCGUG- -5'
7683 3' -56.3 NC_001973.1 + 95010 0.66 0.893688
Target:  5'- uGCUGUACG-GCUUcguGCCGAUGuGCGg -3'
miRNA:   3'- uUGACAUGCaCGGG---UGGCUGCuCGUg -5'
7683 3' -56.3 NC_001973.1 + 34270 0.66 0.893688
Target:  5'- aAACuUGUccACgGUGCCCACaaaGuuGAGCACg -3'
miRNA:   3'- -UUG-ACA--UG-CACGGGUGg--CugCUCGUG- -5'
7683 3' -56.3 NC_001973.1 + 109849 0.66 0.88691
Target:  5'- cGCg--GCGUcGCcgCCGCCGACGAGgACg -3'
miRNA:   3'- uUGacaUGCA-CG--GGUGGCUGCUCgUG- -5'
7683 3' -56.3 NC_001973.1 + 146002 0.66 0.879905
Target:  5'- cGGCUcGgggaGCGgGUCCGCCGGCucGAGCGCg -3'
miRNA:   3'- -UUGA-Ca---UGCaCGGGUGGCUG--CUCGUG- -5'
7683 3' -56.3 NC_001973.1 + 65282 0.66 0.879905
Target:  5'- aGACga-ACGUGUCCAUuuUGACGAGCGu -3'
miRNA:   3'- -UUGacaUGCACGGGUG--GCUGCUCGUg -5'
7683 3' -56.3 NC_001973.1 + 7631 0.66 0.879905
Target:  5'- cAGCUGcGCGcGCUCGCCGccaGCGGGCu- -3'
miRNA:   3'- -UUGACaUGCaCGGGUGGC---UGCUCGug -5'
7683 3' -56.3 NC_001973.1 + 82321 0.66 0.871943
Target:  5'- cGCUG-GCGUGCgUGCCGuagcacgacuuguACGAGUACa -3'
miRNA:   3'- uUGACaUGCACGgGUGGC-------------UGCUCGUG- -5'
7683 3' -56.3 NC_001973.1 + 68936 0.66 0.865232
Target:  5'- gGGCUucauCGUGCUCGgCGuCGAGCGCg -3'
miRNA:   3'- -UUGAcau-GCACGGGUgGCuGCUCGUG- -5'
7683 3' -56.3 NC_001973.1 + 21584 0.66 0.865232
Target:  5'- ---aGUGCucGCCgGCCGACGuGCACc -3'
miRNA:   3'- uugaCAUGcaCGGgUGGCUGCuCGUG- -5'
7683 3' -56.3 NC_001973.1 + 40164 0.66 0.863718
Target:  5'- cGGCgGUcGCGUgGCCCGagcugaucugcaCGACGGGCACg -3'
miRNA:   3'- -UUGaCA-UGCA-CGGGUg-----------GCUGCUCGUG- -5'
7683 3' -56.3 NC_001973.1 + 104257 0.67 0.857575
Target:  5'- cAGCUGUucgGCGgcgGCgCCGCCGcCGGGCu- -3'
miRNA:   3'- -UUGACA---UGCa--CG-GGUGGCuGCUCGug -5'
7683 3' -56.3 NC_001973.1 + 83658 0.67 0.849712
Target:  5'- cGCUGcgGCG-GCCCGCucgcuucgaCGACGAGCucGCg -3'
miRNA:   3'- uUGACa-UGCaCGGGUG---------GCUGCUCG--UG- -5'
7683 3' -56.3 NC_001973.1 + 5162 0.67 0.849712
Target:  5'- cAGCUgGUugGUGUCCGgCG-CGAGcCACu -3'
miRNA:   3'- -UUGA-CAugCACGGGUgGCuGCUC-GUG- -5'
7683 3' -56.3 NC_001973.1 + 47695 0.67 0.841649
Target:  5'- cGGCcGUACGUGCCgGgCGGCaGGCAg -3'
miRNA:   3'- -UUGaCAUGCACGGgUgGCUGcUCGUg -5'
7683 3' -56.3 NC_001973.1 + 49748 0.67 0.833394
Target:  5'- uGCUGUGCGUGgC-GCgCGACG-GCACc -3'
miRNA:   3'- uUGACAUGCACgGgUG-GCUGCuCGUG- -5'
7683 3' -56.3 NC_001973.1 + 90200 0.67 0.833394
Target:  5'- aGACUGU-CGUGCaucaagCGCuCGACGcGCACg -3'
miRNA:   3'- -UUGACAuGCACGg-----GUG-GCUGCuCGUG- -5'
7683 3' -56.3 NC_001973.1 + 115328 0.67 0.824955
Target:  5'- --gUGUuCGaucugGCCCACUuggaGACGAGCACg -3'
miRNA:   3'- uugACAuGCa----CGGGUGG----CUGCUCGUG- -5'
7683 3' -56.3 NC_001973.1 + 34982 0.68 0.816338
Target:  5'- gAGgUGUGCGUGCCCGCgcguuuccuCGACGccgccugcGGCAa -3'
miRNA:   3'- -UUgACAUGCACGGGUG---------GCUGC--------UCGUg -5'
7683 3' -56.3 NC_001973.1 + 7391 0.68 0.816338
Target:  5'- --aUGUACGUGCUCgaggcGCCGAUGuGCGu -3'
miRNA:   3'- uugACAUGCACGGG-----UGGCUGCuCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.