miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7683 3' -56.3 NC_001973.1 + 123848 1.08 0.002964
Target:  5'- gAACUGUACGUGCCCACCGACGAGCACg -3'
miRNA:   3'- -UUGACAUGCACGGGUGGCUGCUCGUG- -5'
7683 3' -56.3 NC_001973.1 + 48092 0.8 0.21287
Target:  5'- uGCgGUACGUGCUCGCCGcCGAGCAg -3'
miRNA:   3'- uUGaCAUGCACGGGUGGCuGCUCGUg -5'
7683 3' -56.3 NC_001973.1 + 6416 0.74 0.452426
Target:  5'- uGCgcgGCGgcgGCgCGCCGACGAGCGCg -3'
miRNA:   3'- uUGacaUGCa--CGgGUGGCUGCUCGUG- -5'
7683 3' -56.3 NC_001973.1 + 62956 0.73 0.509468
Target:  5'- aGACuUGcGCGaGCCCGCCGGCGAucaGCGCg -3'
miRNA:   3'- -UUG-ACaUGCaCGGGUGGCUGCU---CGUG- -5'
7683 3' -56.3 NC_001973.1 + 15973 0.72 0.54912
Target:  5'- uGACUGUGCGaccGCUCgACCGAaacUGAGCGCg -3'
miRNA:   3'- -UUGACAUGCa--CGGG-UGGCU---GCUCGUG- -5'
7683 3' -56.3 NC_001973.1 + 555 0.72 0.56931
Target:  5'- aAACUc-GCGUccccGCCCAgCGACGGGCACg -3'
miRNA:   3'- -UUGAcaUGCA----CGGGUgGCUGCUCGUG- -5'
7683 3' -56.3 NC_001973.1 + 3725 0.72 0.579475
Target:  5'- cGCgGcACGUGCaggccguacaCGCCGACGGGCACg -3'
miRNA:   3'- uUGaCaUGCACGg---------GUGGCUGCUCGUG- -5'
7683 3' -56.3 NC_001973.1 + 51845 0.72 0.579475
Target:  5'- -uCUGUGCGaGCUgggCGCCGuCGAGCACa -3'
miRNA:   3'- uuGACAUGCaCGG---GUGGCuGCUCGUG- -5'
7683 3' -56.3 NC_001973.1 + 48861 0.71 0.620448
Target:  5'- cGCUcagaUACGUGCUCGgCGGCGAGCAa -3'
miRNA:   3'- uUGAc---AUGCACGGGUgGCUGCUCGUg -5'
7683 3' -56.3 NC_001973.1 + 88130 0.71 0.624561
Target:  5'- aGAUUGUACGccgcGCCCucgucggcggccgacGCCGcCGAGCACa -3'
miRNA:   3'- -UUGACAUGCa---CGGG---------------UGGCuGCUCGUG- -5'
7683 3' -56.3 NC_001973.1 + 100536 0.71 0.630732
Target:  5'- uACgGUGauCGUGgUgGCCGACGAGCACa -3'
miRNA:   3'- uUGaCAU--GCACgGgUGGCUGCUCGUG- -5'
7683 3' -56.3 NC_001973.1 + 118413 0.71 0.630732
Target:  5'- cAACUGgagACGcUGgCCGCCgggcucGACGAGCGCa -3'
miRNA:   3'- -UUGACa--UGC-ACgGGUGG------CUGCUCGUG- -5'
7683 3' -56.3 NC_001973.1 + 120423 0.71 0.641017
Target:  5'- cAGCUGggcgACGUGCuCCAgCUGAUGGGCGa -3'
miRNA:   3'- -UUGACa---UGCACG-GGU-GGCUGCUCGUg -5'
7683 3' -56.3 NC_001973.1 + 143148 0.7 0.692168
Target:  5'- ---cGUGCGUGCCCGCauCGACGccgGGCGg -3'
miRNA:   3'- uugaCAUGCACGGGUG--GCUGC---UCGUg -5'
7683 3' -56.3 NC_001973.1 + 110110 0.7 0.702283
Target:  5'- cGCgauUACGUGgUCACCGGCGAGCuCa -3'
miRNA:   3'- uUGac-AUGCACgGGUGGCUGCUCGuG- -5'
7683 3' -56.3 NC_001973.1 + 23190 0.69 0.712337
Target:  5'- -cCUGcACGagaugacGCgCGCCGACGAGCGCg -3'
miRNA:   3'- uuGACaUGCa------CGgGUGGCUGCUCGUG- -5'
7683 3' -56.3 NC_001973.1 + 20070 0.69 0.722323
Target:  5'- ---cGUACugGUcCCCGCCGAgCGAGCACa -3'
miRNA:   3'- uugaCAUG--CAcGGGUGGCU-GCUCGUG- -5'
7683 3' -56.3 NC_001973.1 + 128108 0.69 0.722323
Target:  5'- ---cGUACugGUcCCCGCCGAgCGAGCACa -3'
miRNA:   3'- uugaCAUG--CAcGGGUGGCU-GCUCGUG- -5'
7683 3' -56.3 NC_001973.1 + 4216 0.69 0.726296
Target:  5'- cGCUGgaagGCGcGCCUGCCGGCGcucguuugcgugagcGGCGCg -3'
miRNA:   3'- uUGACa---UGCaCGGGUGGCUGC---------------UCGUG- -5'
7683 3' -56.3 NC_001973.1 + 74654 0.69 0.748867
Target:  5'- gAGCggGUAguUGCCCACCGgcuuguuuucgcacACGGGCACg -3'
miRNA:   3'- -UUGa-CAUgcACGGGUGGC--------------UGCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.