miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7683 5' -58.5 NC_001973.1 + 44211 0.66 0.845876
Target:  5'- uGACGauGCcguCGCUGGcggcgaaaaaggccaGCACGUGCUUGa -3'
miRNA:   3'- gCUGC--CGu--GCGACCa--------------CGUGCACGAGC- -5'
7683 5' -58.5 NC_001973.1 + 6208 0.66 0.845093
Target:  5'- cCGGCGGCGCGgUGccgGCGCG-GCg-- -3'
miRNA:   3'- -GCUGCCGUGCgACca-CGUGCaCGagc -5'
7683 5' -58.5 NC_001973.1 + 19539 0.66 0.845093
Target:  5'- aGGCGGUGCGC-GGcGUuuACGUGCcCGa -3'
miRNA:   3'- gCUGCCGUGCGaCCaCG--UGCACGaGC- -5'
7683 5' -58.5 NC_001973.1 + 7665 0.66 0.837166
Target:  5'- aCGACuacgGGCAU-CUGGUGUGCGUG-UCGu -3'
miRNA:   3'- -GCUG----CCGUGcGACCACGUGCACgAGC- -5'
7683 5' -58.5 NC_001973.1 + 120409 0.66 0.829061
Target:  5'- cCGACgucaGGCcccaGCUGG-GCgACGUGCUCc -3'
miRNA:   3'- -GCUG----CCGug--CGACCaCG-UGCACGAGc -5'
7683 5' -58.5 NC_001973.1 + 45968 0.66 0.824116
Target:  5'- gCGGcCGGCGCGCucgcccugcugucgcUGGUGCcGCGaUGC-CGg -3'
miRNA:   3'- -GCU-GCCGUGCG---------------ACCACG-UGC-ACGaGC- -5'
7683 5' -58.5 NC_001973.1 + 88482 0.66 0.812348
Target:  5'- uCGACGGUGcCGCcGGcgcgGCGCG-GCUCc -3'
miRNA:   3'- -GCUGCCGU-GCGaCCa---CGUGCaCGAGc -5'
7683 5' -58.5 NC_001973.1 + 24129 0.66 0.812348
Target:  5'- gGGCGaGCuCGCgGGUGCGCGcGC-CGc -3'
miRNA:   3'- gCUGC-CGuGCGaCCACGUGCaCGaGC- -5'
7683 5' -58.5 NC_001973.1 + 135402 0.67 0.803755
Target:  5'- gGGCGGCGCGCUGGgaagacGaCAUGUacGC-CGu -3'
miRNA:   3'- gCUGCCGUGCGACCa-----C-GUGCA--CGaGC- -5'
7683 5' -58.5 NC_001973.1 + 19959 0.67 0.786133
Target:  5'- aGACGuucauCGCGUUGG-GCACGUaCUCGg -3'
miRNA:   3'- gCUGCc----GUGCGACCaCGUGCAcGAGC- -5'
7683 5' -58.5 NC_001973.1 + 121554 0.67 0.786133
Target:  5'- gCGuCGGCGCGUgUGGUGgaaCACGUaCUCGu -3'
miRNA:   3'- -GCuGCCGUGCG-ACCAC---GUGCAcGAGC- -5'
7683 5' -58.5 NC_001973.1 + 123408 0.67 0.77712
Target:  5'- gGAgGGCGCGCaccgccucgccGGUGCACGcGgUCGu -3'
miRNA:   3'- gCUgCCGUGCGa----------CCACGUGCaCgAGC- -5'
7683 5' -58.5 NC_001973.1 + 41675 0.67 0.771653
Target:  5'- uCGACGGCGCGCgucGGUgggagcacccgcagcGCACGU--UCGc -3'
miRNA:   3'- -GCUGCCGUGCGa--CCA---------------CGUGCAcgAGC- -5'
7683 5' -58.5 NC_001973.1 + 62475 0.67 0.767984
Target:  5'- gGGCuGCGUGCUGGUGC-UGUGgUCGu -3'
miRNA:   3'- gCUGcCGUGCGACCACGuGCACgAGC- -5'
7683 5' -58.5 NC_001973.1 + 50531 0.67 0.758733
Target:  5'- uGAacuCGGC-CaGCUGGcGCuCGUGCUCGa -3'
miRNA:   3'- gCU---GCCGuG-CGACCaCGuGCACGAGC- -5'
7683 5' -58.5 NC_001973.1 + 87124 0.67 0.758733
Target:  5'- nGGCGuGCGCGCgccGGUGCGCcgccUGCUg- -3'
miRNA:   3'- gCUGC-CGUGCGa--CCACGUGc---ACGAgc -5'
7683 5' -58.5 NC_001973.1 + 95974 0.67 0.758733
Target:  5'- aCGGCgGGCGCGCUGGUGUccuucgacaGCGccgaaUCGa -3'
miRNA:   3'- -GCUG-CCGUGCGACCACG---------UGCacg--AGC- -5'
7683 5' -58.5 NC_001973.1 + 124301 0.68 0.749376
Target:  5'- -aAUGGUACGUcGGcgGCACGcGCUCGa -3'
miRNA:   3'- gcUGCCGUGCGaCCa-CGUGCaCGAGC- -5'
7683 5' -58.5 NC_001973.1 + 118096 0.68 0.749376
Target:  5'- aCGugGGCgugACGgUGG-GCGCGgcGCUCa -3'
miRNA:   3'- -GCugCCG---UGCgACCaCGUGCa-CGAGc -5'
7683 5' -58.5 NC_001973.1 + 33906 0.68 0.749376
Target:  5'- -aGCGGCACGggccacgucagcUUGGUgGCACGUGCa-- -3'
miRNA:   3'- gcUGCCGUGC------------GACCA-CGUGCACGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.