Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7683 | 5' | -58.5 | NC_001973.1 | + | 123882 | 1.09 | 0.001796 |
Target: 5'- aCGACGGCACGCUGGUGCACGUGCUCGa -3' miRNA: 3'- -GCUGCCGUGCGACCACGUGCACGAGC- -5' |
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7683 | 5' | -58.5 | NC_001973.1 | + | 74803 | 0.8 | 0.187152 |
Target: 5'- gGGCGcGCACGCgaggcgcgucGUGCGCGUGCUCGa -3' miRNA: 3'- gCUGC-CGUGCGac--------CACGUGCACGAGC- -5' |
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7683 | 5' | -58.5 | NC_001973.1 | + | 81085 | 0.79 | 0.211254 |
Target: 5'- uCGAUGGCguucGCGCUGG-GCGCGgGCUCGu -3' miRNA: 3'- -GCUGCCG----UGCGACCaCGUGCaCGAGC- -5' |
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7683 | 5' | -58.5 | NC_001973.1 | + | 67610 | 0.74 | 0.401145 |
Target: 5'- uGGCGGCGgaGCUGGUGCcggccgcguccgagaGCGUGC-CGa -3' miRNA: 3'- gCUGCCGUg-CGACCACG---------------UGCACGaGC- -5' |
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7683 | 5' | -58.5 | NC_001973.1 | + | 82307 | 0.73 | 0.423168 |
Target: 5'- gCGAUGGCaggugGCGCUGGcGUGCGUGC-CGu -3' miRNA: 3'- -GCUGCCG-----UGCGACCaCGUGCACGaGC- -5' |
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7683 | 5' | -58.5 | NC_001973.1 | + | 158199 | 0.73 | 0.440594 |
Target: 5'- cCGGCGGCAC-CUGGU-CGCGU-CUCGa -3' miRNA: 3'- -GCUGCCGUGcGACCAcGUGCAcGAGC- -5' |
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7683 | 5' | -58.5 | NC_001973.1 | + | 59036 | 0.72 | 0.476624 |
Target: 5'- gCGACGGCACGCUgaccccguucgaGGUGgAgGUGCg-- -3' miRNA: 3'- -GCUGCCGUGCGA------------CCACgUgCACGagc -5' |
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7683 | 5' | -58.5 | NC_001973.1 | + | 46334 | 0.72 | 0.485859 |
Target: 5'- gCGcAgGGCGCGCUGcUGCugGUGCUg- -3' miRNA: 3'- -GC-UgCCGUGCGACcACGugCACGAgc -5' |
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7683 | 5' | -58.5 | NC_001973.1 | + | 48078 | 0.72 | 0.495179 |
Target: 5'- gGACGcguuCACGCUGcG-GUACGUGCUCGc -3' miRNA: 3'- gCUGCc---GUGCGAC-CaCGUGCACGAGC- -5' |
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7683 | 5' | -58.5 | NC_001973.1 | + | 87102 | 0.72 | 0.514055 |
Target: 5'- uGcCGGCACGU--GUGCGCGUGCgCGg -3' miRNA: 3'- gCuGCCGUGCGacCACGUGCACGaGC- -5' |
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7683 | 5' | -58.5 | NC_001973.1 | + | 55891 | 0.71 | 0.533218 |
Target: 5'- gCGGCGGCAgGCUcGG-GCuCGgGCUCGg -3' miRNA: 3'- -GCUGCCGUgCGA-CCaCGuGCaCGAGC- -5' |
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7683 | 5' | -58.5 | NC_001973.1 | + | 62015 | 0.71 | 0.572249 |
Target: 5'- -uGCGGCGCaaccgcccGCUGGUGCGCcgccaccUGCUCGc -3' miRNA: 3'- gcUGCCGUG--------CGACCACGUGc------ACGAGC- -5' |
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7683 | 5' | -58.5 | NC_001973.1 | + | 42878 | 0.7 | 0.59203 |
Target: 5'- gCGGCGGCGCGUgaucUGcaGCGCGUGUcacUCGg -3' miRNA: 3'- -GCUGCCGUGCG----ACcaCGUGCACG---AGC- -5' |
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7683 | 5' | -58.5 | NC_001973.1 | + | 44973 | 0.7 | 0.611921 |
Target: 5'- gGGCcGCACGUccgGGUGCGCGUaGUUCa -3' miRNA: 3'- gCUGcCGUGCGa--CCACGUGCA-CGAGc -5' |
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7683 | 5' | -58.5 | NC_001973.1 | + | 152435 | 0.7 | 0.621891 |
Target: 5'- gGGCGGCGCGCaGGcuuaucGCGCGgcgGCUUa -3' miRNA: 3'- gCUGCCGUGCGaCCa-----CGUGCa--CGAGc -5' |
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7683 | 5' | -58.5 | NC_001973.1 | + | 36153 | 0.69 | 0.645837 |
Target: 5'- gGGCaGCGCGCUGGUcgcguucuuGCACGaccagcgccccgagcUGCUCa -3' miRNA: 3'- gCUGcCGUGCGACCA---------CGUGC---------------ACGAGc -5' |
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7683 | 5' | -58.5 | NC_001973.1 | + | 70053 | 0.69 | 0.661774 |
Target: 5'- aCGAUGGCGuucugaaGCgUGGUGUACGgcagggcggGCUCGa -3' miRNA: 3'- -GCUGCCGUg------CG-ACCACGUGCa--------CGAGC- -5' |
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7683 | 5' | -58.5 | NC_001973.1 | + | 100939 | 0.69 | 0.661774 |
Target: 5'- uGAUGGCGCGCUcGGccaccguuucCACGUcGCUCGg -3' miRNA: 3'- gCUGCCGUGCGA-CCac--------GUGCA-CGAGC- -5' |
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7683 | 5' | -58.5 | NC_001973.1 | + | 6433 | 0.69 | 0.671707 |
Target: 5'- cCGACGaGCGCGCccgucgccGGaGC-CGUGCUCGc -3' miRNA: 3'- -GCUGC-CGUGCGa-------CCaCGuGCACGAGC- -5' |
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7683 | 5' | -58.5 | NC_001973.1 | + | 111338 | 0.69 | 0.68161 |
Target: 5'- --gUGG-ACGCUGGUGCGCGaccaccgGCUCa -3' miRNA: 3'- gcuGCCgUGCGACCACGUGCa------CGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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