miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7683 5' -58.5 NC_001973.1 + 111547 0.68 0.73992
Target:  5'- cCGuCGGCAUGgUGGUGUcgaACGUGaagaUCGc -3'
miRNA:   3'- -GCuGCCGUGCgACCACG---UGCACg---AGC- -5'
7683 5' -58.5 NC_001973.1 + 39399 0.68 0.719784
Target:  5'- uCGACGGCGCGCgccaGGUcggccgcggugagGCGCGUcGCg-- -3'
miRNA:   3'- -GCUGCCGUGCGa---CCA-------------CGUGCA-CGagc -5'
7683 5' -58.5 NC_001973.1 + 115494 0.68 0.711052
Target:  5'- gCGACGugaGCGCGCUGaucgcguucgcGUGCaACGUGCUg- -3'
miRNA:   3'- -GCUGC---CGUGCGAC-----------CACG-UGCACGAgc -5'
7683 5' -58.5 NC_001973.1 + 24711 0.68 0.70813
Target:  5'- cCGACGcGCGCauccucuucuucauGgaGGUGCucGCGUGCUCc -3'
miRNA:   3'- -GCUGC-CGUG--------------CgaCCACG--UGCACGAGc -5'
7683 5' -58.5 NC_001973.1 + 31094 0.68 0.701291
Target:  5'- gCGAgGGCGCGUUGGUGauguugugGUGCUUc -3'
miRNA:   3'- -GCUgCCGUGCGACCACgug-----CACGAGc -5'
7683 5' -58.5 NC_001973.1 + 133964 0.69 0.691474
Target:  5'- uCGACGGCcgucuccgACGUcugGGUGUAgccgguggcCGUGCUCGc -3'
miRNA:   3'- -GCUGCCG--------UGCGa--CCACGU---------GCACGAGC- -5'
7683 5' -58.5 NC_001973.1 + 111338 0.69 0.68161
Target:  5'- --gUGG-ACGCUGGUGCGCGaccaccgGCUCa -3'
miRNA:   3'- gcuGCCgUGCGACCACGUGCa------CGAGc -5'
7683 5' -58.5 NC_001973.1 + 35685 0.69 0.68161
Target:  5'- aCGGCGGCGCGgUGGcggcgaUGCGCGacgagGCgCGa -3'
miRNA:   3'- -GCUGCCGUGCgACC------ACGUGCa----CGaGC- -5'
7683 5' -58.5 NC_001973.1 + 58775 0.69 0.68161
Target:  5'- uGcCGGCGCGCcgUGGUGaaccugaGCGUGCgCGa -3'
miRNA:   3'- gCuGCCGUGCG--ACCACg------UGCACGaGC- -5'
7683 5' -58.5 NC_001973.1 + 6433 0.69 0.671707
Target:  5'- cCGACGaGCGCGCccgucgccGGaGC-CGUGCUCGc -3'
miRNA:   3'- -GCUGC-CGUGCGa-------CCaCGuGCACGAGC- -5'
7683 5' -58.5 NC_001973.1 + 70053 0.69 0.661774
Target:  5'- aCGAUGGCGuucugaaGCgUGGUGUACGgcagggcggGCUCGa -3'
miRNA:   3'- -GCUGCCGUg------CG-ACCACGUGCa--------CGAGC- -5'
7683 5' -58.5 NC_001973.1 + 100939 0.69 0.661774
Target:  5'- uGAUGGCGCGCUcGGccaccguuucCACGUcGCUCGg -3'
miRNA:   3'- gCUGCCGUGCGA-CCac--------GUGCA-CGAGC- -5'
7683 5' -58.5 NC_001973.1 + 36153 0.69 0.645837
Target:  5'- gGGCaGCGCGCUGGUcgcguucuuGCACGaccagcgccccgagcUGCUCa -3'
miRNA:   3'- gCUGcCGUGCGACCA---------CGUGC---------------ACGAGc -5'
7683 5' -58.5 NC_001973.1 + 152435 0.7 0.621891
Target:  5'- gGGCGGCGCGCaGGcuuaucGCGCGgcgGCUUa -3'
miRNA:   3'- gCUGCCGUGCGaCCa-----CGUGCa--CGAGc -5'
7683 5' -58.5 NC_001973.1 + 44973 0.7 0.611921
Target:  5'- gGGCcGCACGUccgGGUGCGCGUaGUUCa -3'
miRNA:   3'- gCUGcCGUGCGa--CCACGUGCA-CGAGc -5'
7683 5' -58.5 NC_001973.1 + 42878 0.7 0.59203
Target:  5'- gCGGCGGCGCGUgaucUGcaGCGCGUGUcacUCGg -3'
miRNA:   3'- -GCUGCCGUGCG----ACcaCGUGCACG---AGC- -5'
7683 5' -58.5 NC_001973.1 + 62015 0.71 0.572249
Target:  5'- -uGCGGCGCaaccgcccGCUGGUGCGCcgccaccUGCUCGc -3'
miRNA:   3'- gcUGCCGUG--------CGACCACGUGc------ACGAGC- -5'
7683 5' -58.5 NC_001973.1 + 55891 0.71 0.533218
Target:  5'- gCGGCGGCAgGCUcGG-GCuCGgGCUCGg -3'
miRNA:   3'- -GCUGCCGUgCGA-CCaCGuGCaCGAGC- -5'
7683 5' -58.5 NC_001973.1 + 87102 0.72 0.514055
Target:  5'- uGcCGGCACGU--GUGCGCGUGCgCGg -3'
miRNA:   3'- gCuGCCGUGCGacCACGUGCACGaGC- -5'
7683 5' -58.5 NC_001973.1 + 48078 0.72 0.495179
Target:  5'- gGACGcguuCACGCUGcG-GUACGUGCUCGc -3'
miRNA:   3'- gCUGCc---GUGCGAC-CaCGUGCACGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.