miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7684 3' -55.3 NC_001973.1 + 108734 0.66 0.952737
Target:  5'- aACCaUGUCGuCGCGCucGUCGAcgCGGCg -3'
miRNA:   3'- -UGGcGUAGU-GCGUGcuCAGCUa-GCCG- -5'
7684 3' -55.3 NC_001973.1 + 87431 0.66 0.952737
Target:  5'- gGCCGCGUCGauaGcCAUGGGgaugggccCGA-CGGCg -3'
miRNA:   3'- -UGGCGUAGUg--C-GUGCUCa-------GCUaGCCG- -5'
7684 3' -55.3 NC_001973.1 + 120620 0.66 0.952737
Target:  5'- cGCCGCcuAUCugGUggACGAG-CGcgcCGGCg -3'
miRNA:   3'- -UGGCG--UAGugCG--UGCUCaGCua-GCCG- -5'
7684 3' -55.3 NC_001973.1 + 102141 0.66 0.952737
Target:  5'- cGCCGUcgCcuCGCgACGGGUCGAgCaGCa -3'
miRNA:   3'- -UGGCGuaGu-GCG-UGCUCAGCUaGcCG- -5'
7684 3' -55.3 NC_001973.1 + 23266 0.66 0.952737
Target:  5'- cCCGCcgCGCGCGCuuGccCGG-CGGCg -3'
miRNA:   3'- uGGCGuaGUGCGUGcuCa-GCUaGCCG- -5'
7684 3' -55.3 NC_001973.1 + 115314 0.66 0.952737
Target:  5'- gUCGCAcCACGguCGuGuUCGAUCuGGCc -3'
miRNA:   3'- uGGCGUaGUGCguGCuC-AGCUAG-CCG- -5'
7684 3' -55.3 NC_001973.1 + 31872 0.66 0.952338
Target:  5'- gGCgGUggCGCGCACGucgguguGGUCGAaguaGGCg -3'
miRNA:   3'- -UGgCGuaGUGCGUGC-------UCAGCUag--CCG- -5'
7684 3' -55.3 NC_001973.1 + 53445 0.66 0.948645
Target:  5'- cACCag--CACGCACGGGUag--CGGCg -3'
miRNA:   3'- -UGGcguaGUGCGUGCUCAgcuaGCCG- -5'
7684 3' -55.3 NC_001973.1 + 108919 0.66 0.948645
Target:  5'- gGCgCGCGUCACGCucucgcugcucGCGAacUCGAgcaaGGCg -3'
miRNA:   3'- -UG-GCGUAGUGCG-----------UGCUc-AGCUag--CCG- -5'
7684 3' -55.3 NC_001973.1 + 8029 0.66 0.948645
Target:  5'- gGCCGCGaCACGCAC-AGaUCauGUUGGCu -3'
miRNA:   3'- -UGGCGUaGUGCGUGcUC-AGc-UAGCCG- -5'
7684 3' -55.3 NC_001973.1 + 88578 0.66 0.948645
Target:  5'- cGCaCGCA-CugGCGCGccucGUCGGU-GGCg -3'
miRNA:   3'- -UG-GCGUaGugCGUGCu---CAGCUAgCCG- -5'
7684 3' -55.3 NC_001973.1 + 63137 0.66 0.947372
Target:  5'- gACCGCcucgAUCuccgccuuggagaaGCGCACGAGcgCGAacUCGcGCg -3'
miRNA:   3'- -UGGCG----UAG--------------UGCGUGCUCa-GCU--AGC-CG- -5'
7684 3' -55.3 NC_001973.1 + 76528 0.66 0.944766
Target:  5'- uGCCgGCcuaCGCGCAaaaguuuuacaacaaGGGUgCGAUCGGCg -3'
miRNA:   3'- -UGG-CGua-GUGCGUg--------------CUCA-GCUAGCCG- -5'
7684 3' -55.3 NC_001973.1 + 115394 0.66 0.944324
Target:  5'- cGCCgGCugagCGCGCACGAuUCG--CGGCu -3'
miRNA:   3'- -UGG-CGua--GUGCGUGCUcAGCuaGCCG- -5'
7684 3' -55.3 NC_001973.1 + 83164 0.66 0.944324
Target:  5'- gACgCGCGaguaCACGCugGuGUCGuacaagCGGCu -3'
miRNA:   3'- -UG-GCGUa---GUGCGugCuCAGCua----GCCG- -5'
7684 3' -55.3 NC_001973.1 + 14251 0.66 0.943432
Target:  5'- cGCCGCGcgucgacaccagCACGCGCGAaUCGAacgcgaCGGUg -3'
miRNA:   3'- -UGGCGUa-----------GUGCGUGCUcAGCUa-----GCCG- -5'
7684 3' -55.3 NC_001973.1 + 146065 0.66 0.939772
Target:  5'- gGCCGCG--GCGC-CGAGcCGGcUCGGg -3'
miRNA:   3'- -UGGCGUagUGCGuGCUCaGCU-AGCCg -5'
7684 3' -55.3 NC_001973.1 + 124170 0.66 0.939772
Target:  5'- cGCCGacggaauGUCGCGCcuCGAGcgCGAggucgCGGCg -3'
miRNA:   3'- -UGGCg------UAGUGCGu-GCUCa-GCUa----GCCG- -5'
7684 3' -55.3 NC_001973.1 + 160775 0.66 0.939772
Target:  5'- uACCGaugaCAUCACGCcCaAGcUCGAgcUCGGCg -3'
miRNA:   3'- -UGGC----GUAGUGCGuGcUC-AGCU--AGCCG- -5'
7684 3' -55.3 NC_001973.1 + 80566 0.66 0.939772
Target:  5'- -gCGCAgUAUGCGCGGGUCGucgcucaUGGCc -3'
miRNA:   3'- ugGCGUaGUGCGUGCUCAGCua-----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.