miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7684 5' -54.5 NC_001973.1 + 23804 0.66 0.966081
Target:  5'- cGGCCaCuuCUUCGGCGacgCGGCCCu- -3'
miRNA:   3'- cUCGGaGuuGAAGCUGCa--GCUGGGcg -5'
7684 5' -54.5 NC_001973.1 + 63919 0.66 0.962791
Target:  5'- cGAGCUggAGCUgagCGACuG-CGugCCGCu -3'
miRNA:   3'- -CUCGGagUUGAa--GCUG-CaGCugGGCG- -5'
7684 5' -54.5 NC_001973.1 + 10538 0.66 0.962791
Target:  5'- gGAGCC-CGGC-UCGACGaCGugCuCGUc -3'
miRNA:   3'- -CUCGGaGUUGaAGCUGCaGCugG-GCG- -5'
7684 5' -54.5 NC_001973.1 + 70115 0.66 0.962791
Target:  5'- -cGCCUCGGCgcccgcggCGAUGUCGAgCauggugCGCa -3'
miRNA:   3'- cuCGGAGUUGaa------GCUGCAGCUgG------GCG- -5'
7684 5' -54.5 NC_001973.1 + 65186 0.66 0.959285
Target:  5'- cGGCgCUCAACUacaugcUCGACaUgGGCCgGCa -3'
miRNA:   3'- cUCG-GAGUUGA------AGCUGcAgCUGGgCG- -5'
7684 5' -54.5 NC_001973.1 + 42010 0.66 0.959285
Target:  5'- aGGCCUUcgucaAACcggCGAgCGUCGACCUGg -3'
miRNA:   3'- cUCGGAG-----UUGaa-GCU-GCAGCUGGGCg -5'
7684 5' -54.5 NC_001973.1 + 104250 0.66 0.959285
Target:  5'- -cGuCCgUCAGCUguUCGGCGgCGGCgCCGCc -3'
miRNA:   3'- cuC-GG-AGUUGA--AGCUGCaGCUG-GGCG- -5'
7684 5' -54.5 NC_001973.1 + 59884 0.66 0.955558
Target:  5'- cGGCCcCAACggCGGCGcggugUCGGCCaaCGCg -3'
miRNA:   3'- cUCGGaGUUGaaGCUGC-----AGCUGG--GCG- -5'
7684 5' -54.5 NC_001973.1 + 123028 0.66 0.955558
Target:  5'- -cGCCgcCAGCgUCGAguccagucUGUCGACCgGCa -3'
miRNA:   3'- cuCGGa-GUUGaAGCU--------GCAGCUGGgCG- -5'
7684 5' -54.5 NC_001973.1 + 121700 0.66 0.955558
Target:  5'- cGAG-CUCGGCggCGGCGUCGucguCCuCGUc -3'
miRNA:   3'- -CUCgGAGUUGaaGCUGCAGCu---GG-GCG- -5'
7684 5' -54.5 NC_001973.1 + 153914 0.66 0.955558
Target:  5'- cGAGCCU--GCa--GACGcCGAgCCCGCu -3'
miRNA:   3'- -CUCGGAguUGaagCUGCaGCU-GGGCG- -5'
7684 5' -54.5 NC_001973.1 + 153953 0.66 0.955558
Target:  5'- cGAGCCU--GCa--GACGcCGAgCCCGCu -3'
miRNA:   3'- -CUCGGAguUGaagCUGCaGCU-GGGCG- -5'
7684 5' -54.5 NC_001973.1 + 49006 0.66 0.954004
Target:  5'- cGGUCUCAccuuGCUUCGAacgccuuggccaaGcagggCGACCCGCu -3'
miRNA:   3'- cUCGGAGU----UGAAGCUg------------Ca----GCUGGGCG- -5'
7684 5' -54.5 NC_001973.1 + 117889 0.66 0.951606
Target:  5'- cGAGCCggAGCgUCGACG-CGACCa-- -3'
miRNA:   3'- -CUCGGagUUGaAGCUGCaGCUGGgcg -5'
7684 5' -54.5 NC_001973.1 + 137530 0.66 0.951606
Target:  5'- uGAGUUUUuugUUCGGCGaCGGCCCGUc -3'
miRNA:   3'- -CUCGGAGuugAAGCUGCaGCUGGGCG- -5'
7684 5' -54.5 NC_001973.1 + 88751 0.66 0.951198
Target:  5'- -cGCCUCGua---GGCGUCGcgcaggcacucguGCCCGCu -3'
miRNA:   3'- cuCGGAGUugaagCUGCAGC-------------UGGGCG- -5'
7684 5' -54.5 NC_001973.1 + 121527 0.66 0.951198
Target:  5'- -cGCCgcCAGCUUgcccaccaccgagCGGCGUCGGCgCGUg -3'
miRNA:   3'- cuCGGa-GUUGAA-------------GCUGCAGCUGgGCG- -5'
7684 5' -54.5 NC_001973.1 + 119332 0.66 0.947425
Target:  5'- -cGCCgCGAgUUCGAUcuaCGACCUGCg -3'
miRNA:   3'- cuCGGaGUUgAAGCUGca-GCUGGGCG- -5'
7684 5' -54.5 NC_001973.1 + 121656 0.66 0.947425
Target:  5'- -cGCCUCGAagggCG-CGUCG-CUCGCg -3'
miRNA:   3'- cuCGGAGUUgaa-GCuGCAGCuGGGCG- -5'
7684 5' -54.5 NC_001973.1 + 35504 0.66 0.947425
Target:  5'- -cGCCUCGACccCGAgcUCG-CCCGCc -3'
miRNA:   3'- cuCGGAGUUGaaGCUgcAGCuGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.