miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7685 3' -56.5 NC_001973.1 + 105682 0.66 0.927157
Target:  5'- gCGAGU-CGGUCg--UGAgCGGCACGc -3'
miRNA:   3'- aGCUCAgGUCAGacaGCUgGCCGUGC- -5'
7685 3' -56.5 NC_001973.1 + 45387 0.66 0.914569
Target:  5'- cUCGAGcagCUGGUCgcccaccacgaacuUGUCG-CCGGCGCc -3'
miRNA:   3'- -AGCUCa--GGUCAG--------------ACAGCuGGCCGUGc -5'
7685 3' -56.5 NC_001973.1 + 152375 0.66 0.898252
Target:  5'- gCGAG-CCGGa----CGGCCGGCGCGg -3'
miRNA:   3'- aGCUCaGGUCagacaGCUGGCCGUGC- -5'
7685 3' -56.5 NC_001973.1 + 55953 0.67 0.87112
Target:  5'- cUCGGGcCCGuUCUGUCGGgagaGGCGCGc -3'
miRNA:   3'- -AGCUCaGGUcAGACAGCUgg--CCGUGC- -5'
7685 3' -56.5 NC_001973.1 + 41117 0.67 0.855537
Target:  5'- cUCGAGUuuGGUCauuuaguUGUCGGCggCGGCGgCGg -3'
miRNA:   3'- -AGCUCAggUCAG-------ACAGCUG--GCCGU-GC- -5'
7685 3' -56.5 NC_001973.1 + 109746 0.68 0.851698
Target:  5'- gCGAGcgaCAGUCUuauuuuuguugcgccGUCGACCGGCcaauCGg -3'
miRNA:   3'- aGCUCag-GUCAGA---------------CAGCUGGCCGu---GC- -5'
7685 3' -56.5 NC_001973.1 + 83783 0.69 0.807361
Target:  5'- cUCGAGU-CGGUCg--CGGCCcGGCACu -3'
miRNA:   3'- -AGCUCAgGUCAGacaGCUGG-CCGUGc -5'
7685 3' -56.5 NC_001973.1 + 136563 0.7 0.724232
Target:  5'- uUCGAaaGUCCAGcauggcgCUG-CGcGCCGGCGCGa -3'
miRNA:   3'- -AGCU--CAGGUCa------GACaGC-UGGCCGUGC- -5'
7685 3' -56.5 NC_001973.1 + 120941 0.7 0.724232
Target:  5'- gUCGAG-CgCGGUCUGcacggCGGCCaGCGCGg -3'
miRNA:   3'- -AGCUCaG-GUCAGACa----GCUGGcCGUGC- -5'
7685 3' -56.5 NC_001973.1 + 123161 0.73 0.584823
Target:  5'- cUCGAgGUCgGGUCcucGUCG-CCGGCGCGc -3'
miRNA:   3'- -AGCU-CAGgUCAGa--CAGCuGGCCGUGC- -5'
7685 3' -56.5 NC_001973.1 + 138020 0.73 0.574878
Target:  5'- --aGGUCCAGggUGUCGACCaGCGCGc -3'
miRNA:   3'- agcUCAGGUCagACAGCUGGcCGUGC- -5'
7685 3' -56.5 NC_001973.1 + 20925 0.73 0.574878
Target:  5'- gCGAG-CCGauugcguUCUGUCGAgCCGGCGCGg -3'
miRNA:   3'- aGCUCaGGUc------AGACAGCU-GGCCGUGC- -5'
7685 3' -56.5 NC_001973.1 + 158739 0.73 0.574878
Target:  5'- -gGAGUCCAG-CUGaagccggCGACCGaGCGCGc -3'
miRNA:   3'- agCUCAGGUCaGACa------GCUGGC-CGUGC- -5'
7685 3' -56.5 NC_001973.1 + 10163 0.73 0.564972
Target:  5'- gUCGAGcgCCGGgugGUCGACCcGCACGa -3'
miRNA:   3'- -AGCUCa-GGUCagaCAGCUGGcCGUGC- -5'
7685 3' -56.5 NC_001973.1 + 123038 1.1 0.002767
Target:  5'- gUCGAGUCCAGUCUGUCGACCGGCACGg -3'
miRNA:   3'- -AGCUCAGGUCAGACAGCUGGCCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.